RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FGF7P21781 194 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 TFPI2P48307 235 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 CMC4P56277 68 aaPredicted RBP7.55□□□□□ -1.2
VPS28-204ENST00000526054 PLP1P60201 277 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 C1orf194Q5T5A4 169 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 LINC00322Q6ZN03 302 aaPredicted RBP7.55□□□□□ -1.2
VPS28-204ENST00000526054 TMEM182Q6ZP80 229 aaPredicted RBP7.55□□□□□ -1.2
VPS28-204ENST00000526054 DEFB125Q8N687 156 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 STXBP6Q8NFX7 210 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 GLMPQ8WWB7 406 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 ATP5SQ99766 215 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 GGTLC1Q9BX51 225 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 ARL6Q9H0F7 186 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 KCNIP2Q9NS61 270 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 DOK5Q9P104 306 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 RNF24Q9Y225 148 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 HIGD1AQ9Y241 93 aa7.55□□□□□ -1.2
VPS28-204ENST00000526054 OR11H12B2RN74 326 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 TAAR5O14804 337 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 OR5G3P0C626 314 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 OPCMLQ14982 345 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 SIGLEC15Q6ZMC9 328 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 Q6ZRG5 221 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 OR8I2Q8N0Y5 310 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 GBGT1Q8N5D6 347 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 STPG3Q8N7X2 389 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 ARPC5LQ9BPX5 153 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 MS4A6AQ9H2W1 248 aa7.54□□□□□ -1.2
VPS28-204ENST00000526054 ALMS1Q8TCU4 4167 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 RBMY1BA6NDE4 496 aaKnown RBP7.53□□□□□ -1.2
VPS28-204ENST00000526054 RBMY1EA6NEQ0 496 aaKnown RBP7.53□□□□□ -1.2
VPS28-204ENST00000526054 ZNF98A6NK75 572 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 H3BRN7 92 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 COX7A2P2O60397 106 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 IFNA5P01569 189 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 RBMY1DP0C7P1 496 aaKnown RBP7.53□□□□□ -1.2
VPS28-204ENST00000526054 GALR1P47211 349 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 RPL29P47914 159 aaKnown RBP7.53□□□□□ -1.2
VPS28-204ENST00000526054 B2MP61769 119 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 MIC13Q5XKP0 118 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 WFDC3Q8IUB2 231 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 ZNF709Q8N972 641 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 OR1L4Q8NGR5 311 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 GPR82Q96P67 336 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 PFDN5Q99471 154 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 SHANK2-AS3Q9BTD1 123 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 NPCDR1Q9BY65 106 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 SLC25A39Q9BZJ4 359 aaPredicted RBP7.53□□□□□ -1.2
VPS28-204ENST00000526054 SMIM3Q9BZL3 60 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 ARV1Q9H2C2 271 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 SLC25A22Q9H936 323 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 NRN1Q9NPD7 142 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 BOLA1Q9Y3E2 137 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 PXMP4Q9Y6I8 212 aa7.53□□□□□ -1.2
VPS28-204ENST00000526054 FRAS1Q86XX4 4008 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 ELOA3CA0A087WX78 387 aaPredicted RBP7.52□□□□□ -1.21
VPS28-204ENST00000526054 BORCS7-ASMTA0A0B4J1R7 106 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 C17orf112F2Z3M2 114 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 K7EQG2 157 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 EIF5AP63241 154 aaKnown RBP7.52□□□□□ -1.21
VPS28-204ENST00000526054 PRR20EP86478 221 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 PRR20CP86479 221 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 PRR20DP86480 221 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 PRR20BP86481 221 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 PRR20AP86496 221 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 ZNF266Q14584 549 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 ODF3L2Q3SX64 289 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 SAMD13Q5VXD3 122 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 SLC51BQ86UW2 128 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 SCGB1C1Q8TD33 95 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 SCRT1Q9BWW7 348 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 ZNF471Q9BX82 626 aaPredicted RBP7.52□□□□□ -1.21
VPS28-204ENST00000526054 WDR61Q9GZS3 305 aaKnown RBP7.52□□□□□ -1.21
VPS28-204ENST00000526054 SLC39A9Q9NUM3 307 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 UBQLN2Q9UHD9 624 aa7.52□□□□□ -1.21
VPS28-204ENST00000526054 RPL7P18124 248 aaKnown RBP7.51□□□□□ -1.21
VPS28-204ENST00000526054 C10orf113Q5VZT2 155 aa7.51□□□□□ -1.21
VPS28-204ENST00000526054 UHRF2Q96PU4 802 aa7.51□□□□□ -1.21
VPS28-204ENST00000526054 PARD6GQ9BYG4 376 aaPredicted RBP7.51□□□□□ -1.21
VPS28-204ENST00000526054 SLC25A32Q9H2D1 315 aa7.51□□□□□ -1.21
VPS28-204ENST00000526054 MAP6D1Q9H9H5 199 aa7.51□□□□□ -1.21
VPS28-204ENST00000526054 TPT1P13693 172 aaKnown RBP7.5□□□□□ -1.21
VPS28-204ENST00000526054 ATF4P18848 351 aaPredicted RBP7.5□□□□□ -1.21
VPS28-204ENST00000526054 ID1P41134 155 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 MEOX2P50222 304 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 SNRPD3P62318 126 aaKnown RBP7.5□□□□□ -1.21
VPS28-204ENST00000526054 LEMD1Q68G75 181 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 PATE2Q6UY27 113 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 LINC00305Q7Z4B0 112 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 DCANP1Q8TF63 244 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 GATAD1Q8WUU5 269 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 SEPSECSQ9HD40 501 aaKnown RBP7.5□□□□□ -1.21
VPS28-204ENST00000526054 DNAJC4Q9NNZ3 241 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 CYTL1Q9NRR1 136 aa7.5□□□□□ -1.21
VPS28-204ENST00000526054 LOC102724200A0A096LPH7 203 aaPredicted RBP7.49□□□□□ -1.21
VPS28-204ENST00000526054 ZNF688P0C7X2 276 aa7.49□□□□□ -1.21
VPS28-204ENST00000526054 DEFB131AP59861 70 aa7.49□□□□□ -1.21
VPS28-204ENST00000526054 RPL7L1Q6DKI1 246 aaKnown RBP7.49□□□□□ -1.21
VPS28-204ENST00000526054 FAM24BQ8N5W8 94 aa7.49□□□□□ -1.21
VPS28-204ENST00000526054 STOML3Q8TAV4 291 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms