RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 EBLN2Q6P2I7 272 aa13.96□□□□□ -0.17
USP40-217ENST00000496298 ZNF431Q8TF32 576 aaPredicted RBP13.96□□□□□ -0.17
USP40-217ENST00000496298 C16orf92Q96LL3 132 aa13.96□□□□□ -0.17
USP40-217ENST00000496298 GGACTQ9BVM4 153 aa13.96□□□□□ -0.17
USP40-217ENST00000496298 SCRT1Q9BWW7 348 aa13.96□□□□□ -0.17
USP40-217ENST00000496298 NUDT15Q9NV35 164 aa13.96□□□□□ -0.17
USP40-217ENST00000496298 TRAV6A0A075B6T7 132 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 SMIM9A6NGZ8 99 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 F6UB75 175 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 DEDDO75618 318 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 IGKV3-20P01619 116 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 LINC00869P0C866 280 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 RAP2BP61225 183 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 RRAS2P62070 204 aaPredicted RBP13.95□□□□□ -0.18
USP40-217ENST00000496298 PSG9Q00887 426 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 ARL16Q0P5N6 197 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 FAM78BQ5VT40 261 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 TEPPQ6URK8 271 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 MGAT4CQ9UBM8 478 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 APLNQ9ULZ1 77 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 HIGD1AQ9Y241 93 aa13.95□□□□□ -0.18
USP40-217ENST00000496298 CCSO14618 274 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 ZNF846Q147U1 533 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 PATE2Q6UY27 113 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 Q6ZTC4 211 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 OR4B1Q8NGF8 309 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 SEC22CQ9BRL7 303 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 C11orf1Q9H5F2 150 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 DOK5Q9P104 306 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 CELA1Q9UNI1 258 aa13.94□□□□□ -0.18
USP40-217ENST00000496298 TRAV8-2A0A0B4J237 113 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 TRAV10A0A0B4J240 114 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 H2AFB2P0C5Z0 115 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 RPL7P18124 248 aaKnown RBP13.93□□□□□ -0.18
USP40-217ENST00000496298 FXYD7P58549 80 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 C12orf74Q32Q52 190 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 PXDC1Q5TGL8 231 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 AMTNQ6UX39 209 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 S100A7AQ86SG5 101 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 C12orf45Q8N5I9 185 aaPredicted RBP13.93□□□□□ -0.18
USP40-217ENST00000496298 SLC35B3Q9H1N7 401 aa13.93□□□□□ -0.18
USP40-217ENST00000496298 DNAH6Q9C0G6 4158 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 A0A087X0K7 114 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 OR5G3P0C626 314 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 IL15RAQ13261 267 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 S100ZQ8WXG8 99 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 ARL6Q9H0F7 186 aa13.92□□□□□ -0.18
USP40-217ENST00000496298 TMEM189A5PLL7 270 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 IGLL5B9A064 214 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 SLC38A11Q08AI6 406 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 ASAH1Q13510 395 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 ZNF546Q86UE3 836 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 C1orf158Q8N1D5 194 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 C2orf50Q96LR7 162 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 UHRF2Q96PU4 802 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 RNF24Q9Y225 148 aa13.91□□□□□ -0.18
USP40-217ENST00000496298 FAM240BA0A1B0GVZ2 78 aa13.9□□□□□ -0.18
USP40-217ENST00000496298 L7N2F9 121 aa13.9□□□□□ -0.18
USP40-217ENST00000496298 AGPAT2O15120 278 aa13.9□□□□□ -0.18
USP40-217ENST00000496298 MRPS12O15235 138 aaKnown RBP13.9□□□□□ -0.18
USP40-217ENST00000496298 VAMP2P63027 116 aa13.9□□□□□ -0.18
USP40-217ENST00000496298 RPP25LQ8N5L8 163 aaKnown RBP13.9□□□□□ -0.18
USP40-217ENST00000496298 RFNGQ9Y644 331 aa13.9□□□□□ -0.18
USP40-217ENST00000496298 C5orf51A6NDU8 294 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 FAM25EA8MYX2 175 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 GOSR2O14653 212 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 DUSP14O95147 198 aaKnown RBP13.89□□□□□ -0.19
USP40-217ENST00000496298 IGFL4Q6B9Z1 124 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 MZT2BQ6NZ67 158 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 MGST2Q99735 147 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 RNF126Q9BV68 326 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 ARV1Q9H2C2 271 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 GOLT1BQ9Y3E0 138 aa13.89□□□□□ -0.19
USP40-217ENST00000496298 LSM5Q9Y4Y9 91 aaKnown RBP13.89□□□□□ -0.19
USP40-217ENST00000496298 A6NHS1 94 aa13.88□□□□□ -0.19
USP40-217ENST00000496298 AMBPP02760 352 aa13.88□□□□□ -0.19
USP40-217ENST00000496298 CNN1P51911 297 aaKnown RBP13.88□□□□□ -0.19
USP40-217ENST00000496298 RNF182Q8N6D2 247 aa13.88□□□□□ -0.19
USP40-217ENST00000496298 IGF2BP2-AS1Q96M15 143 aa13.88□□□□□ -0.19
USP40-217ENST00000496298 DNAH10Q8IVF4 4471 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 IGHV4-4A0A075B6R2 117 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 IGHV3OR16-12A0A075B7B8 117 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 DEFB131BA0A096LNP1 70 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 SPART-AS1P0CW21 52 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 CXCL3P19876 107 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 PRR20EP86478 221 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 PRR20CP86479 221 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 PRR20DP86480 221 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 PRR20BP86481 221 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 PRR20AP86496 221 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 FGL1Q08830 312 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 VWC2Q2TAL6 325 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 OR11H7Q8NGC8 314 aa13.87□□□□□ -0.19
USP40-217ENST00000496298 FRAS1Q86XX4 4008 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 FAM24AA6NFZ4 105 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 PVALBP20472 110 aaPredicted RBP13.86□□□□□ -0.19
USP40-217ENST00000496298 BCAP31P51572 246 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 CAV2P51636 162 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 ZNF767PQ75MW2 155 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 LINC00305Q7Z4B0 112 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms