RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 RPRMLQ8N4K4 120 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 SIGLEC8Q9NYZ4 499 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 ENSAO43768 121 aaKnown RBP15□□□□□ -0.01
CCDC88B-207ENST00000479965 ADAMTSL5Q6ZMM2 481 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 MDS2Q8NDY4 140 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 IGHV3-72A0A0B4J1Y9 119 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 M0R1B8 84 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 GP9P14770 177 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 CCL3L1P16619 93 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 TMEM108Q6UXF1 575 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 OR9G4Q8NGQ1 327 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 TNFRSF14Q92956 283 aa15□□□□□ -0.01
CCDC88B-207ENST00000479965 GPR179Q6PRD1 2367 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 KIR2DL2P43627 348 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 AMN1Q8IY45 258 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 ZCCHC24Q8N2G6 241 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 CLUHP3Q96NS8 147 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 COL25A1Q9BXS0 654 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 SMIM13P0DJ93 91 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 PSG3Q16557 428 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 THAP8Q8NA92 274 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 OR10X1Q8NGY0 326 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 BOD1L1Q8NFC6 3051 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 TPRP12270 2363 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 A0A1W2PPI3 338 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 NPIPB6E9PJ23 425 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 NKX2-8O15522 239 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 OR4X2Q8NGF9 303 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 PRELID3AQ96N28 172 aa14.99□□□□□ -0.01
CCDC88B-207ENST00000479965 A0A1W2PRD5 423 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 A0A1W2PRF3 423 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 A0A1W2PRM7 423 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 TMEM213A2RRL7 107 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 TNFRSF1AP19438 455 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 BCL6BQ8N143 479 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 C9orf106Q8NAJ2 232 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 SIGMAR1Q99720 223 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 DKK2Q9UBU2 259 aa14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 TSSC4Q9Y5U2 329 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-207ENST00000479965 SMKR1H3BMG3 65 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 APOBEC3AP31941 199 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 FXYD2P54710 66 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 ABHD17AQ96GS6 310 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 NCOR1O75376 2440 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 LGALS9BQ3B8N2 356 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 LGALS9CQ6DKI2 356 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 UBALD2Q8IYN6 164 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 OR4C13Q8NGP0 309 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 GAFA1Q96PS6 74 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 RNF7Q9UBF6 113 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 IFI27L1Q96BM0 104 aa14.97□□□□□ -0.01
CCDC88B-207ENST00000479965 C17orf77Q96MU5 243 aa14.96□□□□□ -0.01
CCDC88B-207ENST00000479965 HIGD1AQ9Y241 93 aa14.96□□□□□ -0.01
CCDC88B-207ENST00000479965 LHBP01229 141 aa14.96□□□□□ -0.02
CCDC88B-207ENST00000479965 ZNF788Q6ZQV5 615 aa14.96□□□□□ -0.02
CCDC88B-207ENST00000479965 MTURNQ8N3F0 131 aa14.96□□□□□ -0.02
CCDC88B-207ENST00000479965 TMEM167AQ8TBQ9 72 aa14.96□□□□□ -0.02
CCDC88B-207ENST00000479965 FAM222BQ8WU58 562 aa14.96□□□□□ -0.02
CCDC88B-207ENST00000479965 SMIM17P0DL12 118 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 TMEM164Q5U3C3 297 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 RITA1Q96K30 269 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 NHP2Q9NX24 153 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 PPIAL4EA0A075B759 164 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 M0R296 226 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 IGLV2-11P01706 119 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 PPIAL4FP0DN26 164 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 OTORQ9NRC9 128 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 HBDP02042 147 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 TNFAIP6P98066 277 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 ZNF833PQ6ZTB9 187 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 C8orf46Q8TAG6 207 aa14.95□□□□□ -0.02
CCDC88B-207ENST00000479965 SPENQ96T58 3664 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-207ENST00000479965 ZNF785A8K8V0 405 aa14.94□□□□□ -0.02
CCDC88B-207ENST00000479965 RBP4P02753 201 aa14.94□□□□□ -0.02
CCDC88B-207ENST00000479965 LYZL1Q6UWQ5 148 aa14.94□□□□□ -0.02
CCDC88B-207ENST00000479965 DPF1Q92782 380 aa14.94□□□□□ -0.02
CCDC88B-207ENST00000479965 IGLV1-44P01699 117 aa14.93□□□□□ -0.02
CCDC88B-207ENST00000479965 ORMDL3Q8N138 153 aa14.93□□□□□ -0.02
CCDC88B-207ENST00000479965 TMEM178AQ8NBL3 297 aa14.93□□□□□ -0.02
CCDC88B-207ENST00000479965 DSCAML1Q8TD84 2053 aa14.93□□□□□ -0.02
CCDC88B-207ENST00000479965 WFDC2Q14508 124 aa14.93□□□□□ -0.02
CCDC88B-207ENST00000479965 KALRNO60229 2985 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 M0R3E3 92 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 OVOL3O00110 214 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 CKS2P33552 79 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 TRGV9Q99603 122 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 PSG8Q9UQ74 426 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 IGKV2D-26A0A0A0MRZ7 120 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 GAGE12HA6NDE8 117 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 CT45A10P0DMU9 189 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 SH2D6Q7Z4S9 175 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 FER1L6-AS2Q96M78 137 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 C8orf49Q96NF6 230 aa14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 SLC25A39Q9BZJ4 359 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-207ENST00000479965 A0A1B0GV72 72 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 A0A1W2PNU3 283 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 SIVA1O15304 175 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 CRIP1P50238 77 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 CCL8P80075 99 aa14.91□□□□□ -0.02
CCDC88B-207ENST00000479965 VMA21Q3ZAQ7 101 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms