RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
CUX1-207ENST00000465461 RFNGQ9Y644 331 aa8.61□□□□□ -1.03
CUX1-207ENST00000465461 SMLR1H3BR10 107 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 SOCS3O14543 225 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 COX7A2P2O60397 106 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 GIPP09681 153 aaPredicted RBP8.6□□□□□ -1.03
CUX1-207ENST00000465461 PRB4P10163 310 aaPredicted RBP8.6□□□□□ -1.03
CUX1-207ENST00000465461 CMC4P56277 68 aaPredicted RBP8.6□□□□□ -1.03
CUX1-207ENST00000465461 B2MP61769 119 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 RAB31Q13636 194 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 GCSAMLQ5JQS6 135 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 ACTL10Q5JWF8 245 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 LINC00305Q7Z4B0 112 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 NPCDR1Q9BY65 106 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 WDR61Q9GZS3 305 aaKnown RBP8.6□□□□□ -1.03
CUX1-207ENST00000465461 SLC39A9Q9NUM3 307 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 FBXL17Q9UF56 701 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 PXMP4Q9Y6I8 212 aa8.6□□□□□ -1.03
CUX1-207ENST00000465461 GALR1P47211 349 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 RPL29P47914 159 aaKnown RBP8.59□□□□□ -1.03
CUX1-207ENST00000465461 C10orf113Q5VZT2 155 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 Q6ZRG5 221 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 C20orf173Q96LM9 149 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 ATP5SQ99766 215 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 SPATA25Q9BR10 227 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 DNAJC4Q9NNZ3 241 aa8.59□□□□□ -1.03
CUX1-207ENST00000465461 AGRNO00468 2067 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 G3V3Q6 166 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 H3BTX0 84 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 MRPS12O15235 138 aaKnown RBP8.58□□□□□ -1.04
CUX1-207ENST00000465461 SNRPD3P62318 126 aaKnown RBP8.58□□□□□ -1.04
CUX1-207ENST00000465461 PXDC1Q5TGL8 231 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 GDF5OSQ5U4N7 250 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 RNF182Q8N6D2 247 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 OR2T35Q8NGX2 323 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 C16orf92Q96LL3 132 aa8.58□□□□□ -1.04
CUX1-207ENST00000465461 FXYD6-FXYD2A0A087WZ82 144 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 TRAV8-2A0A0B4J237 113 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 F6UB75 175 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 IGKV3-20P01619 116 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 ATF4P18848 351 aaPredicted RBP8.57□□□□□ -1.04
CUX1-207ENST00000465461 HLA-DMBP28068 263 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 APOC4P55056 127 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 DEFB135Q30KP9 77 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 SPATA31B1PQ5VZV4 182 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 STHQ8IWL8 128 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 OR1L4Q8NGR5 311 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 OVOL2Q9BRP0 275 aa8.57□□□□□ -1.04
CUX1-207ENST00000465461 HUWE1Q7Z6Z7 4374 aaKnown RBP8.57□□□□□ -1.04
CUX1-207ENST00000465461 COL7A1Q02388 2944 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 ELOA3CA0A087WX78 387 aaPredicted RBP8.56□□□□□ -1.04
CUX1-207ENST00000465461 MPDU1O75352 247 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 EIF3GO75821 320 aaKnown RBP eCLIP8.56□□□□□ -1.04
CUX1-207ENST00000465461 IFNA5P01569 189 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 RPL7P18124 248 aaKnown RBP8.56□□□□□ -1.04
CUX1-207ENST00000465461 S100A7P31151 101 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 ID1P41134 155 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 TRPT1Q86TN4 253 aaKnown RBP8.56□□□□□ -1.04
CUX1-207ENST00000465461 ZNF709Q8N972 641 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 SCGB1C1Q8TD33 95 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 GPR82Q96P67 336 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 CSTL1Q9H114 145 aa8.56□□□□□ -1.04
CUX1-207ENST00000465461 H3BQ15 152 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 CA1P00915 261 aaPredicted RBP8.55□□□□□ -1.04
CUX1-207ENST00000465461 ZNF705DP0CH99 300 aaPredicted RBP8.55□□□□□ -1.04
CUX1-207ENST00000465461 ZNF705BP0CI00 300 aaPredicted RBP8.55□□□□□ -1.04
CUX1-207ENST00000465461 PSMB3P49720 205 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 FXYD7P58549 80 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 FAM78BQ5VT40 261 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 DMRTA1Q5VZB9 504 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 MIR17HGQ75NE6 70 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 AQP10Q96PS8 301 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 PFDN5Q99471 154 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 SEPSECSQ9HD40 501 aaKnown RBP8.55□□□□□ -1.04
CUX1-207ENST00000465461 CLEC5AQ9NY25 188 aa8.55□□□□□ -1.04
CUX1-207ENST00000465461 KIR2DL5BA0A0G2JN68 375 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 KIR2DL5BA0A0G2JPC4 375 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 RNF222A6NCQ9 220 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 C17orf112F2Z3M2 114 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 H3BMM0 161 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 SLC17A3O00476 420 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 ISLRO14498 428 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 SPRY2O43597 315 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 GIG44P09565 113 aaPredicted RBP8.54□□□□□ -1.04
CUX1-207ENST00000465461 PYYP10082 97 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 C4BPBP20851 252 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 FFAR4Q5NUL3 377 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 S100A7AQ86SG5 101 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 BPIFA4PQ86YQ2 179 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 KIR2DL5AQ8N109 375 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 KIR2DL5BQ8NHK3 375 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 LRRC20Q8TCA0 184 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 ASB13Q8WXK3 278 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 WWC2-AS2Q96NR7 200 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 SAV1Q9H4B6 383 aaPredicted RBP8.54□□□□□ -1.04
CUX1-207ENST00000465461 TNFSF18Q9UNG2 199 aa8.54□□□□□ -1.04
CUX1-207ENST00000465461 A0A087X0K7 114 aa8.53□□□□□ -1.04
CUX1-207ENST00000465461 UBE2CO00762 179 aa8.53□□□□□ -1.04
CUX1-207ENST00000465461 ARPC5O15511 151 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms