RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 MIC13Q5XKP0 118 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 TMEM182Q6ZP80 229 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-214ENST00000454018 Q6ZRG5 221 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 OR1B1Q8NGR6 318 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 OR2K2Q8NGT1 345 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 GRAMD2BQ96HH9 432 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 PFDN5Q99471 154 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 NEURL2Q9BR09 285 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 VSIRQ9H7M9 311 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 WFDC1Q9HC57 220 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 SMPXQ9UHP9 88 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 RNF24Q9Y225 148 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 PXMP4Q9Y6I8 212 aa6.63□□□□□ -1.35
SYNE1-214ENST00000454018 KANTRA0A1W2PQU2 76 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 CHEK1O14757 476 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 BCL2L11O43521 198 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 SPRY2O43597 315 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 COX7A2P2O60397 106 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 PFDN1O60925 122 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 HYPMO75409 117 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 JTBO76095 146 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 ORM2P19652 201 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 EDN2P20800 178 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 LCN12Q6JVE5 192 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 ADAMTSL5Q6ZMM2 481 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 PPP1R14BQ96C90 147 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 PSMG3Q9BT73 122 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-214ENST00000454018 RSG1Q9BU20 258 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 RHPN1-AS1Q9BWJ2 59 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 ARL6Q9H0F7 186 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 SLC39A9Q9NUM3 307 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 ZMAT5Q9UDW3 170 aaKnown RBP6.62□□□□□ -1.35
SYNE1-214ENST00000454018 MLXQ9UH92 298 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 HIGD1AQ9Y241 93 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 TIMM9Q9Y5J7 89 aa6.62□□□□□ -1.35
SYNE1-214ENST00000454018 IGHV3-49A0A0A0MS15 119 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 OR5G3P0C626 314 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 CXCL2P19875 107 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 DEFB114Q30KQ6 69 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 C1orf194Q5T5A4 169 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 RPL7L1Q6DKI1 246 aaKnown RBP6.61□□□□□ -1.35
SYNE1-214ENST00000454018 HSD17B11Q8NBQ5 300 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 OR1L4Q8NGR5 311 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 GNPNAT1Q96EK6 184 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-214ENST00000454018 ARV1Q9H2C2 271 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 DOK5Q9P104 306 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 CMYA5Q8N3K9 4069 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 DNHD1Q96M86 4753 aa6.61□□□□□ -1.35
SYNE1-214ENST00000454018 IGHV3OR16-13A0A075B7E8 117 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 IGHV3-74A0A0B4J1X5 117 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 TRAV25A0A0B4J276 109 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 HELTA6NFD8 242 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 H3BRN7 92 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 BUB3O43684 328 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 APOHP02749 345 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 C4BPBP20851 252 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 EIF5AP63241 154 aaKnown RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 EGFEM1PQ0D2K5 195 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 C10orf113Q5VZT2 155 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 LAMTOR1Q6IAA8 161 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 TMUB2Q71RG4 321 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 TMEM61Q8N0U2 210 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 OR2G3Q8NGZ4 309 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 GATAD1Q8WUU5 269 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 GLMPQ8WWB7 406 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 RNF2Q99496 336 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 SHANK2-AS3Q9BTD1 123 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 SLC25A39Q9BZJ4 359 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 ZNF98A6NK75 572 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 G3V4G9 280 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 ATP6V0CP27449 155 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 SERF2P84101 59 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 FFAR4Q5NUL3 377 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 KPRPQ5T749 579 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 SIGLEC15Q6ZMC9 328 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 RBPMS2Q6ZRY4 209 aaKnown RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 TCF24Q7RTU0 167 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 LINC00305Q7Z4B0 112 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 C9orf62Q8N4C0 152 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 TMEM37Q8WXS4 190 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 GPR82Q96P67 336 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 UHRF2Q96PU4 802 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 SPAG8Q99932 426 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 ZNF471Q9BX82 626 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 MRPL32Q9BYC8 188 aaKnown RBP6.6□□□□□ -1.35
SYNE1-214ENST00000454018 DNAJC4Q9NNZ3 241 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 CYTL1Q9NRR1 136 aa6.6□□□□□ -1.35
SYNE1-214ENST00000454018 IGHV3-66A0A0C4DH42 116 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 RPL7P18124 248 aaKnown RBP6.59□□□□□ -1.35
SYNE1-214ENST00000454018 ACOT6Q3I5F7 207 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-214ENST00000454018 LGALSLQ3ZCW2 172 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-214ENST00000454018 PATE2Q6UY27 113 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 OR8I2Q8N0Y5 310 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 STOML3Q8TAV4 291 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 SCRT1Q9BWW7 348 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 SLC25A22Q9H936 323 aa6.59□□□□□ -1.35
SYNE1-214ENST00000454018 ZNF256Q9Y2P7 627 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-214ENST00000454018 TRAV2A0A0B4J234 112 aa6.58□□□□□ -1.36
SYNE1-214ENST00000454018 MBP02144 154 aa6.58□□□□□ -1.36
SYNE1-214ENST00000454018 TPT1P13693 172 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms