RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ARV1Q9H2C2 271 aa9.24□□□□□ -0.93
USP40-205ENST00000430158 SLC25A32Q9H2D1 315 aa9.24□□□□□ -0.93
USP40-205ENST00000430158 DNAJC4Q9NNZ3 241 aa9.24□□□□□ -0.93
USP40-205ENST00000430158 CYTL1Q9NRR1 136 aa9.24□□□□□ -0.93
USP40-205ENST00000430158 hCG_2014768A0A024R1R8 64 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 ELOA3CA0A087WX78 387 aaPredicted RBP9.23□□□□□ -0.93
USP40-205ENST00000430158 HELTA6NFD8 242 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 OR4C46A6NHA9 309 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 CD81P60033 236 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 CD300CQ08708 224 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 INO80EQ8NBZ0 244 aaPredicted RBP9.23□□□□□ -0.93
USP40-205ENST00000430158 MRAPQ8TCY5 172 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 PFDN2Q9UHV9 154 aa9.23□□□□□ -0.93
USP40-205ENST00000430158 IGKV3-7A0A075B6H7 116 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 ARPC5O15511 151 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 OR5G3P0C626 314 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 IGHV4-30-4P0DP06 118 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 CXCL2P19875 107 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 AP2S1P53680 142 aaPredicted RBP9.22□□□□□ -0.93
USP40-205ENST00000430158 LINC00305Q7Z4B0 112 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 OR8I2Q8N0Y5 310 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 KCNRGQ8N5I3 272 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 DEFB125Q8N687 156 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 GATAD1Q8WUU5 269 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 MFFQ9GZY8 342 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 NRN1Q9NPD7 142 aa9.22□□□□□ -0.93
USP40-205ENST00000430158 TRAV5A0A0B4J249 113 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 RBMY1BA6NDE4 496 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 RBMY1EA6NEQ0 496 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 OR11H12B2RN74 326 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 COX7A2P2O60397 106 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 IFNA5P01569 189 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 RBMY1DP0C7P1 496 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 TFPI2P48307 235 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 ZNF345Q14585 488 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 C10orf113Q5VZT2 155 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 RPL7L1Q6DKI1 246 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 Q6ZRG5 221 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 GTSCR1Q86UQ5 136 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 STXBP6Q8NFX7 210 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 FAM167A-AS1Q96KT0 104 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 MAP6D1Q9H9H5 199 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 SEPSECSQ9HD40 501 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 TIMM9Q9Y5J7 89 aa9.21□□□□□ -0.94
USP40-205ENST00000430158 HUWE1Q7Z6Z7 4374 aaKnown RBP9.21□□□□□ -0.94
USP40-205ENST00000430158 A0A087X0K7 114 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 RPL11P62913 178 aaKnown RBP9.2□□□□□ -0.94
USP40-205ENST00000430158 PAFAH1B2P68402 229 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 ZNF266Q14584 549 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 SPATA31B1PQ5VZV4 182 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 WFDC3Q8IUB2 231 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 OR1L4Q8NGR5 311 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 OR2G3Q8NGZ4 309 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 SCGB1C1Q8TD33 95 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 PPP1R14BQ96C90 147 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 GPR82Q96P67 336 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 PFDN5Q99471 154 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 SLC25A22Q9H936 323 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 UBQLN2Q9UHD9 624 aa9.2□□□□□ -0.94
USP40-205ENST00000430158 TRAV8-2A0A0B4J237 113 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 C17orf112F2Z3M2 114 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 DNASE2O00115 360 aaPredicted RBP9.19□□□□□ -0.94
USP40-205ENST00000430158 C1QBP02746 253 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 FRMD6-AS1P0C7T7 363 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 IGLC2P0DOY2 106 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 RPL7P18124 248 aaKnown RBP9.19□□□□□ -0.94
USP40-205ENST00000430158 ATP6V0CP27449 155 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 S100A7P31151 101 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 ZNF124Q15973 351 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 DEFB121Q5J5C9 76 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 AKAP14Q86UN6 197 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 ZNF709Q8N972 641 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 HSD17B11Q8NBQ5 300 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 PSMG3Q9BT73 122 aaPredicted RBP9.19□□□□□ -0.94
USP40-205ENST00000430158 KCNIP2Q9NS61 270 aa9.19□□□□□ -0.94
USP40-205ENST00000430158 H3BQ15 152 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 TAAR5O14804 337 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 GALR1P47211 349 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 CMC4P56277 68 aaPredicted RBP9.18□□□□□ -0.94
USP40-205ENST00000430158 FFAR4Q5NUL3 377 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 MIR17HGQ75NE6 70 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 APRG1Q8IVJ8 170 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 C20orf173Q96LM9 149 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 B9D2Q9BPU9 175 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 SLC25A2Q9BXI2 301 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 SH3BGRL3Q9H299 93 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 SRD5A3Q9H8P0 318 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 TMEM14CQ9P0S9 112 aa9.18□□□□□ -0.94
USP40-205ENST00000430158 A0A0D9SG52 128 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 ISLRO14498 428 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 ZNF688P0C7X2 276 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 DEFB131AP59861 70 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 LGALSLQ3ZCW2 172 aaPredicted RBP9.17□□□□□ -0.94
USP40-205ENST00000430158 S100A7AQ86SG5 101 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 SAT2Q96F10 170 aaPredicted RBP9.17□□□□□ -0.94
USP40-205ENST00000430158 ZNF503Q96F45 646 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 FUT9Q9Y231 359 aa9.17□□□□□ -0.94
USP40-205ENST00000430158 BORCS7-ASMTA0A0B4J1R7 106 aa9.16□□□□□ -0.94
USP40-205ENST00000430158 JTBO76095 146 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms