RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TRBV9A0A0B4J1U6 114 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 IGHV1-3A0A0C4DH29 117 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 CGB1A6NKQ9 187 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 LY6HO94772 140 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 CRISP2P16562 243 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 LGALS4P56470 323 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 FBXL19-AS1Q494R0 122 aa7.73□□□□□ -1.17
COL6A3-204ENST00000392003 IBA57Q5T440 356 aaKnown RBP7.73□□□□□ -1.17
COL6A3-204ENST00000392003 MRPL27Q9P0M9 148 aaKnown RBP7.73□□□□□ -1.17
COL6A3-204ENST00000392003 ARFGEF3Q5TH69 2177 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 SNURFLB1AK76 121 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 BUB1B-PAK6H3BSN5 160 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 APELAP0DMC3 54 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PYYP10082 97 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 SSBP2P81877 361 aaPredicted RBP7.72□□□□□ -1.17
COL6A3-204ENST00000392003 LINC00305Q7Z4B0 112 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 Q8N976 141 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 FAM167A-AS1Q96KT0 104 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 SAMD10Q9BYL1 202 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 FBXL7Q9UJT9 491 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 SIGLEC9Q9Y336 463 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 V9GYV3 84 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 ISLRO14498 428 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 TOX4O94842 621 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 RBP4P02753 201 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 IGLC1P0CG04 106 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PRB3Q04118 309 aaPredicted RBP7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PPP1R27Q86WC6 154 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 BAGE3Q86Y29 109 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 BAGE2Q86Y30 109 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 RITA1Q96K30 269 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 RNASE7Q9H1E1 156 aaKnown RBP7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PSMB11A5LHX3 300 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 F2Z2F3 143 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 MOSP00540 346 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 TGFAP01135 160 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 IGLV1-47P01700 117 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 MT-ND6P03923 174 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 LINC00310P59036 64 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 UBE2G1P62253 170 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 FXYD3Q14802 87 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 CDSNQ15517 529 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 MORN5Q5VZ52 161 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 CMTM2Q8TAZ6 248 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 CHRDL1Q9BU40 450 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PPDPFQ9H3Y8 114 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 UBTD1Q9HAC8 227 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 NAT8BQ9UHF3 227 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 CDC42EP3Q9UKI2 254 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 WNK2Q9Y3S1 2297 aa7.72□□□□□ -1.17
COL6A3-204ENST00000392003 PKD1L2Q7Z442 2459 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 MUC21A0A0G2JKD1 596 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 MUC21A0A140T8X8 626 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 TCL1AP56279 114 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 MUC21Q5SSG8 566 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 TRGV9Q99603 122 aa7.71□□□□□ -1.17
COL6A3-204ENST00000392003 PEX7O00628 323 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 SPINK4O60575 86 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 SLC25A5P05141 298 aaKnown RBP7.71□□□□□ -1.18
COL6A3-204ENST00000392003 CNTFRP26992 372 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 DLX1P56177 255 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 TPPP2P59282 170 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 MRAP2Q96G30 205 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 VCX2Q9H322 139 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 FBXL15Q9H469 300 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 IGKV1D-37A0A075B6S9 117 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 IGHV3-21A0A0B4J1V1 117 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 FSTL3O95633 263 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 GNLYP22749 145 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 PATE2Q6UY27 113 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 OR4F17Q8NGA8 305 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 RNF5Q99942 180 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 GNB1LQ9BYB4 327 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 ZNF331Q9NQX6 463 aaPredicted RBP7.71□□□□□ -1.18
COL6A3-204ENST00000392003 TP53TG3Q9ULZ0 132 aa7.71□□□□□ -1.18
COL6A3-204ENST00000392003 SPG11Q96JI7 2443 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 RPL24P83731 157 aaKnown RBP7.7□□□□□ -1.18
COL6A3-204ENST00000392003 ZNF841Q6ZN19 808 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 OR4B1Q8NGF8 309 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 MRPL36Q9P0J6 103 aaKnown RBP7.7□□□□□ -1.18
COL6A3-204ENST00000392003 TEX48A0A1B0GUV7 120 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 DIRC3C9JPN6 131 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 HTR1DP28221 377 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 CX3CL1P78423 397 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 SRSF12Q8WXF0 261 aaKnown RBP7.7□□□□□ -1.18
COL6A3-204ENST00000392003 PRORYQ9H606 182 aa7.7□□□□□ -1.18
COL6A3-204ENST00000392003 F11RQ9Y624 299 aaKnown RBP7.7□□□□□ -1.18
COL6A3-204ENST00000392003 PGPA6NDG6 321 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 HSD52Q0P140 79 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 ANXA2RQ3ZCQ2 193 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 ZNF329Q86UD4 541 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 NHLRC2Q8NBF2 726 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 TMEM116Q8NCL8 245 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 GAGE12HA6NDE8 117 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-204ENST00000392003 TM4SF20Q53R12 229 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 FXYD5Q96DB9 178 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 IGF2BP2-AS1Q96M15 143 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 HIGD1AQ9Y241 93 aa7.69□□□□□ -1.18
COL6A3-204ENST00000392003 HLA-DQA1P01909 254 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms