RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 UHRF2Q96PU4 802 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 RSG1Q9BU20 258 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 SAV1Q9H4B6 383 aaPredicted RBP11.82□□□□□ -0.52
LSM1-201ENST00000311351 NPVFQ9HCQ7 196 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 HIGD1AQ9Y241 93 aa11.82□□□□□ -0.52
LSM1-201ENST00000311351 FNDC10F2Z333 226 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 OR5G3P0C626 314 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 S100A10P60903 97 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 FOXI2Q6ZQN5 318 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 C16orf92Q96LL3 132 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 SHANK2-AS3Q9BTD1 123 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 SLC25A39Q9BZJ4 359 aaPredicted RBP11.81□□□□□ -0.52
LSM1-201ENST00000311351 C11orf1Q9H5F2 150 aa11.81□□□□□ -0.52
LSM1-201ENST00000311351 EPPK1P58107 5090 aaKnown RBP11.8□□□□□ -0.52
LSM1-201ENST00000311351 INMT-MINDY4F8WBC2 141 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 HYPMO75409 117 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 MIFP14174 115 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 MEOX2P50222 304 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 BCAP31P51572 246 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 CAV2P51636 162 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 RAP2BP61225 183 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 NUTF2P61970 127 aaKnown RBP11.8□□□□□ -0.52
LSM1-201ENST00000311351 SELENOTP62341 195 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 TEPPQ6URK8 271 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 OR4B1Q8NGF8 309 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 C2orf50Q96LR7 162 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 MFFQ9GZY8 342 aa11.8□□□□□ -0.52
LSM1-201ENST00000311351 KLK5Q9Y337 293 aaPredicted RBP11.8□□□□□ -0.52
LSM1-201ENST00000311351 FAM24AA6NFZ4 105 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 CST7O76096 145 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 PLP1P60201 277 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 IGFL4Q6B9Z1 124 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 GPR82Q96P67 336 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 C1QTNF4Q9BXJ3 329 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 ARL6Q9H0F7 186 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 SLC35B3Q9H1N7 401 aa11.79□□□□□ -0.52
LSM1-201ENST00000311351 ELOA3CA0A087WX78 387 aaPredicted RBP11.78□□□□□ -0.52
LSM1-201ENST00000311351 TRAV8-2A0A0B4J237 113 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 A0A0J9YX75 114 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 AGPAT2O15120 278 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 DEDDO75618 318 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 PVALBP20472 110 aaPredicted RBP11.78□□□□□ -0.52
LSM1-201ENST00000311351 FGL1Q08830 312 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 RAB32Q13637 225 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 FAM78BQ5VT40 261 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 SAMD13Q5VXD3 122 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 PATE2Q6UY27 113 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 ZNF546Q86UE3 836 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 RNF182Q8N6D2 247 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 ZNF709Q8N972 641 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 MGST2Q99735 147 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 MARVELD1Q9BSK0 173 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 GGACTQ9BVM4 153 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 RPRMQ9NS64 109 aa11.78□□□□□ -0.52
LSM1-201ENST00000311351 LY6G6CO95867 125 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 S100A7P31151 101 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 IL15RAQ13261 267 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 EBLN2Q6P2I7 272 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 ARV1Q9H2C2 271 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 CELA1Q9UNI1 258 aa11.77□□□□□ -0.53
LSM1-201ENST00000311351 IGSF23A1L1A6 192 aa11.76□□□□□ -0.53
LSM1-201ENST00000311351 GOSR2O14653 212 aa11.76□□□□□ -0.53
LSM1-201ENST00000311351 PTTG1O95997 202 aa11.76□□□□□ -0.53
LSM1-201ENST00000311351 RPL7P18124 248 aaKnown RBP11.76□□□□□ -0.53
LSM1-201ENST00000311351 IGHV3OR16-12A0A075B7B8 117 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 UBE2L5PA0A1B0GUS4 154 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 SIX6O95475 246 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 ZNF705DP0CH99 300 aaPredicted RBP11.75□□□□□ -0.53
LSM1-201ENST00000311351 ZNF705BP0CI00 300 aaPredicted RBP11.75□□□□□ -0.53
LSM1-201ENST00000311351 PRB4P10163 310 aaPredicted RBP11.75□□□□□ -0.53
LSM1-201ENST00000311351 HLA-DMBP28068 263 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 PSG9Q00887 426 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 SPATA31B1PQ5VZV4 182 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 ZNF705AQ6ZN79 300 aaPredicted RBP11.75□□□□□ -0.53
LSM1-201ENST00000311351 Q6ZTC4 211 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 CLUHP3Q96NS8 147 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 HRH4Q9H3N8 390 aa11.75□□□□□ -0.53
LSM1-201ENST00000311351 LYRM2Q9NU23 88 aaPredicted RBP11.75□□□□□ -0.53
LSM1-201ENST00000311351 A0A087X0K7 114 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 ZNF705FA8MVS1 300 aaPredicted RBP11.74□□□□□ -0.53
LSM1-201ENST00000311351 MRPS12O15235 138 aaKnown RBP11.74□□□□□ -0.53
LSM1-201ENST00000311351 COX7A2P2O60397 106 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 CAMLGP49069 296 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 CYCSP99999 105 aaKnown RBP11.74□□□□□ -0.53
LSM1-201ENST00000311351 MORN5Q5VZ52 161 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 MIC13Q5XKP0 118 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 AMTNQ6UX39 209 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 ZNF767PQ75MW2 155 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 LINC00305Q7Z4B0 112 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 TMEM252Q8N6L7 170 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 UQCC1Q9NVA1 299 aa11.74□□□□□ -0.53
LSM1-201ENST00000311351 A8MTW9 85 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 SSNA1O43805 119 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 SNRPCP09234 159 aaKnown RBP11.73□□□□□ -0.53
LSM1-201ENST00000311351 SULT1A1P50225 295 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 CNN1P51911 297 aaKnown RBP11.73□□□□□ -0.53
LSM1-201ENST00000311351 PXDC1Q5TGL8 231 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 ZNF738Q8NE65 137 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 TMEM37Q8WXS4 190 aa11.73□□□□□ -0.53
LSM1-201ENST00000311351 WDR83OSQ9Y284 106 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms