RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 RFX7Q2KHR2 1363 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 AK9Q5TCS8 1911 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 ZSWIM8A7E2V4 1837 aa13.02□□□□□ -0.32
LIG1-213ENST00000596672 BRCA2P51587 3418 aa13.02□□□□□ -0.32
LIG1-213ENST00000596672 ZBTB48P10074 688 aaPredicted RBP13.02□□□□□ -0.33
LIG1-213ENST00000596672 RGS19P49795 217 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 FKBP1CQ5VVH2 108 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 TBC1D9Q6ZT07 1266 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 MIGA2Q7L4E1 593 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 ANKRD13AQ8IZ07 590 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 PANK1Q8TE04 598 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 SSH3Q8TE77 659 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 ZKSCAN4Q969J2 545 aaPredicted RBP13.02□□□□□ -0.33
LIG1-213ENST00000596672 OPTNQ96CV9 577 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 HMG20BQ9P0W2 317 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 GAKO14976 1311 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 ZBED9Q6R2W3 1325 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.33
LIG1-213ENST00000596672 INPP5BP32019 993 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 IREB2P48200 963 aaKnown RBP13.01□□□□□ -0.33
LIG1-213ENST00000596672 MAP3K9P80192 1104 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 ATP8B2P98198 1209 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 TCP10Q12799 353 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 TNFAIP1Q13829 316 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 CTU1Q7Z7A3 348 aaKnown RBP13.01□□□□□ -0.33
LIG1-213ENST00000596672 FAM83AQ86UY5 434 aa13.01□□□□□ -0.33
LIG1-213ENST00000596672 DDX4Q9NQI0 724 aaKnown RBP13.01□□□□□ -0.33
LIG1-213ENST00000596672 MKI67P46013 3256 aaKnown RBP13□□□□□ -0.33
LIG1-213ENST00000596672 MANSC4A6NHS7 340 aaPredicted RBP13□□□□□ -0.33
LIG1-213ENST00000596672 UNCXA6NJT0 531 aa13□□□□□ -0.33
LIG1-213ENST00000596672 LDHBP07195 334 aaKnown RBP13□□□□□ -0.33
LIG1-213ENST00000596672 MCAMP43121 646 aa13□□□□□ -0.33
LIG1-213ENST00000596672 RHBDL3P58872 404 aa13□□□□□ -0.33
LIG1-213ENST00000596672 CRHR2Q13324 411 aa13□□□□□ -0.33
LIG1-213ENST00000596672 FAM43AQ8N2R8 423 aa13□□□□□ -0.33
LIG1-213ENST00000596672 FAM151AQ8WW52 585 aa13□□□□□ -0.33
LIG1-213ENST00000596672 USP40Q9NVE5 1235 aa13□□□□□ -0.33
LIG1-213ENST00000596672 DENND2AQ9ULE3 1009 aa13□□□□□ -0.33
LIG1-213ENST00000596672 RPAP1Q9BWH6 1393 aaPredicted RBP12.99□□□□□ -0.33
LIG1-213ENST00000596672 SEMA3EO15041 775 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 WDHD1O75717 1129 aaPredicted RBP12.99□□□□□ -0.33
LIG1-213ENST00000596672 SREBF2Q12772 1141 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 MOGSQ13724 837 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 NOM1Q5C9Z4 860 aaKnown RBP12.99□□□□□ -0.33
LIG1-213ENST00000596672 NEUROD6Q96NK8 337 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 DBNDD2Q9BQY9 259 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 TLR7Q9NYK1 1049 aaKnown RBP12.99□□□□□ -0.33
LIG1-213ENST00000596672 ZNF112Q9UJU3 913 aa12.99□□□□□ -0.33
LIG1-213ENST00000596672 MAST3O60307 1309 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 PDS5AQ29RF7 1337 aaKnown RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 DDTLA6NHG4 134 aaPredicted RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 SPDYE5A6NIY4 337 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 IRF6O14896 467 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 ARID4AP29374 1257 aaPredicted RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 MECOMQ03112 1051 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 OTUD5Q96G74 571 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 FAM163AQ96GL9 167 aaPredicted RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 WRNIP1Q96S55 665 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 SNRKQ9NRH2 765 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 GNL3LQ9NVN8 582 aaKnown RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 ABCF2Q9UG63 623 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 HPS5Q9UPZ3 1129 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 HDAC5Q9UQL6 1122 aa12.98□□□□□ -0.33
LIG1-213ENST00000596672 NOP58Q9Y2X3 529 aaKnown RBP12.98□□□□□ -0.33
LIG1-213ENST00000596672 CDK5RAP2Q96SN8 1893 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 SIPA1L1O43166 1804 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 PHIPQ8WWQ0 1821 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 DOCK2Q92608 1830 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 PHF20L1A8MW92 1017 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 FKTNO75072 461 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 TNNI2P48788 182 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 RGS3P49796 1198 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 SOX10P56693 466 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 TNNI3KQ59H18 835 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 CEP85Q6P2H3 762 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 SIRT2Q8IXJ6 389 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 SPATA5Q8NB90 893 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 IDI2Q9BXS1 227 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.97□□□□□ -0.33
LIG1-213ENST00000596672 FPGT-TNNI3KV9GXZ4 949 aa12.97□□□□□ -0.33
LIG1-213ENST00000596672 PTPRFP10586 1907 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 CEP290O15078 2479 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 GPR75-ASB3A0A0A6YYF3 556 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 CCL15-CCL14A0A0B4J2E2 113 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 INHBEP58166 350 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 G3BP1Q13283 466 aaKnown RBP eCLIP12.96□□□□□ -0.334e-6■■■■□ 21.1
LIG1-213ENST00000596672 RRP1BQ14684 758 aaKnown RBP12.96□□□□□ -0.33
LIG1-213ENST00000596672 CCL15Q16663 113 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 ADGRA1Q86SQ6 560 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 ITPRIPQ8IWB1 547 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 NSUN4Q96CB9 384 aaKnown RBP12.96□□□□□ -0.33
LIG1-213ENST00000596672 EAF2Q96CJ1 260 aaPredicted RBP12.96□□□□□ -0.33
LIG1-213ENST00000596672 DBNLQ9UJU6 430 aaKnown RBP12.96□□□□□ -0.33
LIG1-213ENST00000596672 AKAP2Q9Y2D5 859 aa12.96□□□□□ -0.33
LIG1-213ENST00000596672 MROH7-TTC4A0A0A0MT08 1334 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 BTBD19C9JJ37 291 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 SURF6O75683 361 aaKnown RBP12.95□□□□□ -0.34
LIG1-213ENST00000596672 CTGFP29279 349 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 BTDP43251 543 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 MAP3K10Q02779 954 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms