RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CENPQQ7L2Z9 268 aaPredicted RBP24.63■■□□□ 1.53
USP53-208ENST00000514305 XAGE2Q96GT9 111 aa24.63■■□□□ 1.53
USP53-208ENST00000514305 GPATCH3Q96I76 525 aa24.63■■□□□ 1.53
USP53-208ENST00000514305 IL1RAPL2Q9NP60 686 aa24.63■■□□□ 1.53
USP53-208ENST00000514305 FAM205AQ6ZU69 1335 aa24.62■■□□□ 1.53
USP53-208ENST00000514305 GYG1P46976 350 aa24.62■■□□□ 1.53
USP53-208ENST00000514305 MFSD14BQ5SR56 506 aa24.62■■□□□ 1.53
USP53-208ENST00000514305 TDRD7Q8NHU6 1098 aaKnown RBP24.62■■□□□ 1.53
USP53-208ENST00000514305 ANGEL1Q9UNK9 670 aaKnown RBP24.62■■□□□ 1.53
USP53-208ENST00000514305 UQCRFS1P1P0C7P4 283 aa24.61■■□□□ 1.53
USP53-208ENST00000514305 FBXO33Q7Z6M2 555 aa24.61■■□□□ 1.53
USP53-208ENST00000514305 FAM84BQ96KN1 310 aaPredicted RBP24.61■■□□□ 1.53
USP53-208ENST00000514305 VEZTQ9HBM0 779 aa24.61■■□□□ 1.53
USP53-208ENST00000514305 CLRN2A0PK11 232 aa24.6■■□□□ 1.53
USP53-208ENST00000514305 SEMA3EO15041 775 aa24.6■■□□□ 1.53
USP53-208ENST00000514305 SREBF2Q12772 1141 aa24.6■■□□□ 1.53
USP53-208ENST00000514305 EAF2Q96CJ1 260 aaPredicted RBP24.6■■□□□ 1.53
USP53-208ENST00000514305 PRMT6Q96LA8 375 aaPredicted RBP24.6■■□□□ 1.53
USP53-208ENST00000514305 PCDHAC2Q9Y5I4 1007 aa24.6■■□□□ 1.53
USP53-208ENST00000514305 PPP1R12BO60237 982 aaPredicted RBP24.59■■□□□ 1.53
USP53-208ENST00000514305 MKRN3Q13064 507 aaKnown RBP24.59■■□□□ 1.53
USP53-208ENST00000514305 SUPT20HL1Q3ZLR7 823 aa24.59■■□□□ 1.53
USP53-208ENST00000514305 TTC39AQ5SRH9 613 aa24.59■■□□□ 1.53
USP53-208ENST00000514305 CCDC8Q9H0W5 538 aaPredicted RBP24.59■■□□□ 1.53
USP53-208ENST00000514305 BCL11AQ9H165 835 aa24.59■■□□□ 1.53
USP53-208ENST00000514305 TTF2Q9UNY4 1162 aaKnown RBP24.59■■□□□ 1.53
USP53-208ENST00000514305 C19orf67A6NJJ6 358 aa24.58■■□□□ 1.53
USP53-208ENST00000514305 BCAMP50895 628 aa24.58■■□□□ 1.53
USP53-208ENST00000514305 B4GALNT3Q6L9W6 998 aa24.58■■□□□ 1.53
USP53-208ENST00000514305 SERPINA10Q9UK55 444 aa24.58■■□□□ 1.53
USP53-208ENST00000514305 DENND2AQ9ULE3 1009 aa24.58■■□□□ 1.53
USP53-208ENST00000514305 TM4SF4P48230 202 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 NUCB1Q02818 461 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 TNFAIP1Q13829 316 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 LDLRAD1Q5T700 205 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 CCDC102BQ68D86 513 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 CHD1LQ86WJ1 897 aa24.57■■□□□ 1.52
USP53-208ENST00000514305 SMARCA5O60264 1052 aaPredicted RBP24.56■■□□□ 1.52
USP53-208ENST00000514305 DBNDD2Q9BQY9 259 aa24.56■■□□□ 1.52
USP53-208ENST00000514305 MYH13Q9UKX3 1938 aa24.56■■□□□ 1.52
USP53-208ENST00000514305 MAP3K11Q16584 847 aa24.55■■□□□ 1.52
USP53-208ENST00000514305 TBC1D22AQ8WUA7 517 aa24.55■■□□□ 1.52
USP53-208ENST00000514305 SLC10A4Q96EP9 437 aa24.55■■□□□ 1.52
USP53-208ENST00000514305 ZNF512BQ96KM6 892 aaPredicted RBP24.55■■□□□ 1.52
USP53-208ENST00000514305 FZD1Q9UP38 647 aa24.55■■□□□ 1.52
USP53-208ENST00000514305 SSC5DA1L4H1 1573 aa24.54■■□□□ 1.52
USP53-208ENST00000514305 ERC2O15083 957 aa24.54■■□□□ 1.52
USP53-208ENST00000514305 TBC1D8O95759 1140 aa24.54■■□□□ 1.52
USP53-208ENST00000514305 ADORA1P30542 326 aa24.54■■□□□ 1.52
USP53-208ENST00000514305 CHAF1AQ13111 956 aaPredicted RBP24.54■■□□□ 1.52
USP53-208ENST00000514305 SPRYD7Q5W111 196 aa24.54■■□□□ 1.52
USP53-208ENST00000514305 CTU1Q7Z7A3 348 aaKnown RBP24.54■■□□□ 1.52
USP53-208ENST00000514305 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.54■■□□□ 1.52
USP53-208ENST00000514305 DBNLQ9UJU6 430 aaKnown RBP24.54■■□□□ 1.52
USP53-208ENST00000514305 IQSEC3Q9UPP2 1182 aaPredicted RBP24.54■■□□□ 1.52
USP53-208ENST00000514305 UNCXA6NJT0 531 aa24.53■■□□□ 1.52
USP53-208ENST00000514305 PHKA1P46020 1223 aa24.53■■□□□ 1.52
USP53-208ENST00000514305 IREB2P48200 963 aaKnown RBP24.53■■□□□ 1.52
USP53-208ENST00000514305 RASA3Q14644 834 aa24.53■■□□□ 1.52
USP53-208ENST00000514305 ZGPATQ8N5A5 531 aaKnown RBP24.53■■□□□ 1.52
USP53-208ENST00000514305 WDR66Q8TBY9 1149 aa24.53■■□□□ 1.52
USP53-208ENST00000514305 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.53■■□□□ 1.52
USP53-208ENST00000514305 LAMB1P07942 1786 aa24.52■■□□□ 1.52
USP53-208ENST00000514305 ARID4AP29374 1257 aaPredicted RBP24.52■■□□□ 1.52
USP53-208ENST00000514305 MLLT1Q03111 559 aaPredicted RBP24.52■■□□□ 1.52
USP53-208ENST00000514305 NBPF12Q5TAG4 269 aaPredicted RBP24.52■■□□□ 1.52
USP53-208ENST00000514305 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.52■■□□□ 1.52
USP53-208ENST00000514305 LNPKQ9C0E8 428 aa24.52■■□□□ 1.52
USP53-208ENST00000514305 TDRD3Q9H7E2 651 aaKnown RBP24.52■■□□□ 1.52
USP53-208ENST00000514305 ECHDC1Q9NTX5 307 aa24.52■■□□□ 1.52
USP53-208ENST00000514305 ZNF70Q9UC06 446 aaPredicted RBP24.52■■□□□ 1.52
USP53-208ENST00000514305 AOX1Q06278 1338 aa24.52■■□□□ 1.52
USP53-208ENST00000514305 TTC41PQ6P2S7 1318 aa24.52■■□□□ 1.52
USP53-208ENST00000514305 MANSC4A6NHS7 340 aaPredicted RBP24.51■■□□□ 1.51
USP53-208ENST00000514305 ZBTB48P10074 688 aaPredicted RBP24.51■■□□□ 1.51
USP53-208ENST00000514305 CRKP46108 304 aa24.51■■□□□ 1.51
USP53-208ENST00000514305 TNNI2P48788 182 aa24.51■■□□□ 1.51
USP53-208ENST00000514305 PDS5AQ29RF7 1337 aaKnown RBP24.51■■□□□ 1.51
USP53-208ENST00000514305 IGSF3O75054 1194 aa24.5■■□□□ 1.51
USP53-208ENST00000514305 ALDH1A1P00352 501 aa24.5■■□□□ 1.51
USP53-208ENST00000514305 RGS19P49795 217 aa24.5■■□□□ 1.51
USP53-208ENST00000514305 INHBEP58166 350 aa24.5■■□□□ 1.51
USP53-208ENST00000514305 OTOFQ9HC10 1997 aa24.49■■□□□ 1.51
USP53-208ENST00000514305 MX1P20591 662 aa24.49■■□□□ 1.51
USP53-208ENST00000514305 ZNF296Q8WUU4 475 aaPredicted RBP24.49■■□□□ 1.51
USP53-208ENST00000514305 CLMNQ96JQ2 1002 aa24.49■■□□□ 1.51
USP53-208ENST00000514305 MAST3O60307 1309 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 ATP5JP18859 108 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 HDLBPQ00341 1268 aaKnown RBP24.48■■□□□ 1.51
USP53-208ENST00000514305 NOM1Q5C9Z4 860 aaKnown RBP24.48■■□□□ 1.51
USP53-208ENST00000514305 SPTY2D1Q68D10 685 aaPredicted RBP24.48■■□□□ 1.51
USP53-208ENST00000514305 ANKRD13AQ8IZ07 590 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 SPATA5Q8NB90 893 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 TEKT1Q969V4 418 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 WNK4Q96J92 1243 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 TLR7Q9NYK1 1049 aaKnown RBP24.48■■□□□ 1.51
USP53-208ENST00000514305 SUGT1Q9Y2Z0 365 aa24.48■■□□□ 1.51
USP53-208ENST00000514305 FARP1Q9Y4F1 1045 aaPredicted RBP24.48■■□□□ 1.51
USP53-208ENST00000514305 TCP10L2B9ZVM9 353 aa24.47■■□□□ 1.51
USP53-208ENST00000514305 GPR25O00155 361 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms