RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HBDP02042 147 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 IL3RAP26951 378 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 NTF4P34130 210 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM75Q8N9X5 138 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 RNF138Q8WVD3 245 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 MRPL27Q9P0M9 148 aaKnown RBP2.91□□□□□ -1.94
SCN1A-221ENST00000641996 CASKIN1Q8WXD9 1431 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 CD226Q15762 336 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 PCSK4Q6UW60 755 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 RBM12B-AS1Q9P1G2 102 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 TNS3Q68CZ2 1445 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 A0A1B0GWA3 101 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 AICDAQ9GZX7 198 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 HCSTQ9UBK5 93 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SERP1Q9Y6X1 66 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 IGHV3-7P01780 117 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 RASL10AQ92737 203 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 TRGV11A0A075B6L2 103 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 PI3P19957 117 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 CR1LQ2VPA4 569 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SOSTDC1Q6X4U4 206 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SPRY4Q9C004 299 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 TAC3Q9UHF0 121 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 ATP5G1P05496 136 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 DEFA4P12838 97 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 TM4SF18Q96CE8 201 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 RABAC1Q9UI14 185 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 LSM2Q9Y333 95 aaKnown RBP2.91□□□□□ -1.94
SCN1A-221ENST00000641996 ABCC1P33527 1531 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 CARD19Q96LW7 228 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 PRR25Q96S07 402 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 H3BT86 120 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 CX3CL1P78423 397 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 OSTCQ9NRP0 149 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 PGLYRP4Q96LB8 373 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 BCL2L10Q9HD36 194 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 USP54Q70EL1 1684 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 NUP188Q5SRE5 1749 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 MAP1AP78559 2803 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-221ENST00000641996 COX7A2LO14548 114 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 STPG1Q5TH74 334 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 C18orf32Q8TCD1 76 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 SPANXDQ9BXN6 97 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 NMES1Q9C002 83 aa2.91□□□□□ -1.94
SCN1A-221ENST00000641996 E9PCH4 1651 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 IGHV4-34P06331 123 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 COX5AP20674 150 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 BSPH1Q075Z2 132 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 SRP19P09132 144 aaKnown RBP2.9□□□□□ -1.94
SCN1A-221ENST00000641996 IGLL1P15814 213 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 TMEM207Q6UWW9 146 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 COL5A1P20908 1838 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-221ENST00000641996 INS-IGF2F8WCM5 200 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 IGHMP01871 453 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 MS4A13Q5J8X5 152 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF563Q8TA94 476 aa2.9□□□□□ -1.94
SCN1A-221ENST00000641996 TNRC6BQ9UPQ9 1833 aaKnown RBP2.9□□□□□ -1.94
SCN1A-221ENST00000641996 M0R381 172 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 YPEL4Q96NS1 127 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 UBR1Q8IWV7 1749 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 RNF222A6NCQ9 220 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 SOD1P00441 154 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 FAM57BQ71RH2 274 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 KLHDC9Q8NEP7 349 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 AMELYQ99218 206 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 Q9H3A6 140 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 SLC25A15Q9Y619 301 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 F2Z2F3 143 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 FDCSPQ8NFU4 85 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 MBD5Q9P267 1494 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 CLTCL1P53675 1640 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 KNDC1Q76NI1 1749 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 IGKV3D-7A0A0C4DH55 119 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 C17orf100A8MU93 164 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 K7EMT4 169 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 M0R2P5 195 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM91Q6ZNR0 172 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 Q6ZQT7 251 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 WDR86Q86TI4 376 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 PLXDC1Q8IUK5 500 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 UGGT1Q9NYU2 1555 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00173Q6ZV60 143 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 AAED1Q7RTV5 226 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 CEND1Q8N111 149 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 VOPP1Q96AW1 172 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 SMDT1Q9H4I9 107 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 SS18Q15532 418 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 FAM219BQ5XKK7 198 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 ATP6V0E2Q8NHE4 81 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 TET3O43151 1660 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 MGPP08493 103 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 DANCRP0C864 163 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF322Q6U7Q0 402 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-221ENST00000641996 RPS4Y2Q8TD47 263 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 CLEC2BQ92478 149 aa2.9□□□□□ -1.95
SCN1A-221ENST00000641996 CDK12Q9NYV4 1490 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TCL1BO95988 128 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 ATP4BP51164 291 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 NEURL3Q96EH8 262 aa2.89□□□□□ -1.95
SCN1A-221ENST00000641996 TRAV14DV4A0A0A6YYC5 116 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms