RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DHRS2Q13268 280 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 RNF212Q495C1 297 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 MORN3Q6PF18 240 aaPredicted RBP11.67□□□□□ -0.54
CLN3-264ENST00000637985 SEPSECSQ9HD40 501 aaKnown RBP11.67□□□□□ -0.54
CLN3-264ENST00000637985 PFDN2Q9UHV9 154 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 TMED3Q9Y3Q3 217 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 EPM2AB3EWF7 344 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 BUB3O43684 328 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 SFT2D2O95562 160 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 INAFM2P0DMQ5 153 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 SPP1P10451 314 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 NUP62P37198 522 aaPredicted RBP11.66□□□□□ -0.54
CLN3-264ENST00000637985 UBE2MP61081 183 aaKnown RBP11.66□□□□□ -0.54
CLN3-264ENST00000637985 RAB11AP62491 216 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 GAMTQ14353 236 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 TRPT1Q86TN4 253 aaKnown RBP11.66□□□□□ -0.54
CLN3-264ENST00000637985 OR51G1Q8NGK1 321 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 SLC35E1Q96K37 410 aa11.66□□□□□ -0.54
CLN3-264ENST00000637985 ZFP92A6NM28 416 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 FABP1P07148 127 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 PPP1R1AQ13522 171 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 OR8G2PQ6IF36 304 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 SIGLEC15Q6ZMC9 328 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 RNF125Q96EQ8 232 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 CIB3Q96Q77 187 aaPredicted RBP11.65□□□□□ -0.54
CLN3-264ENST00000637985 SRRQ9GZT4 340 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 NRN1Q9NPD7 142 aa11.65□□□□□ -0.54
CLN3-264ENST00000637985 SRRM2Q9UQ35 2752 aaKnown RBP11.65□□□□□ -0.54
CLN3-264ENST00000637985 NAP1L6A6NFF2 107 aa11.64□□□□□ -0.55
CLN3-264ENST00000637985 SNRPD3P62318 126 aaKnown RBP11.64□□□□□ -0.55
CLN3-264ENST00000637985 RPP30P78346 268 aaKnown RBP11.64□□□□□ -0.55
CLN3-264ENST00000637985 FAT1Q14517 4588 aa11.64□□□□□ -0.55
CLN3-264ENST00000637985 IGKV1D-37A0A075B6S9 117 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 KNCNA6PVL3 124 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 SYNGR2O43760 224 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 IAPPP10997 89 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 INPP1P49441 399 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 PSMG4Q5JS54 123 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 ACTL10Q5JWF8 245 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 FAM210BQ96KR6 192 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 RAB40CQ96S21 281 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 TBC1D24Q9ULP9 559 aa11.63□□□□□ -0.55
CLN3-264ENST00000637985 SNRPGP15A8MWD9 76 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 HOXB5P09067 269 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 C4BPBP20851 252 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 ZNF90Q03938 601 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 TRIQKQ629K1 86 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 CSNK1G2-AS1Q8NCQ2 148 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 TRGV9Q99603 122 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 PBDC1Q9BVG4 233 aa11.62□□□□□ -0.55
CLN3-264ENST00000637985 CFDP00746 253 aaPredicted RBP11.61□□□□□ -0.55
CLN3-264ENST00000637985 BAK1Q16611 211 aa11.61□□□□□ -0.55
CLN3-264ENST00000637985 C1orf194Q5T5A4 169 aa11.61□□□□□ -0.55
CLN3-264ENST00000637985 GGNBP1Q5YKI7 109 aa11.61□□□□□ -0.55
CLN3-264ENST00000637985 SPATA12Q7Z6I5 190 aa11.61□□□□□ -0.55
CLN3-264ENST00000637985 THAP8Q8NA92 274 aa11.61□□□□□ -0.55
CLN3-264ENST00000637985 PAIP2BQ9ULR5 123 aaKnown RBP11.61□□□□□ -0.55
CLN3-264ENST00000637985 C9orf170A2RU37 121 aa11.6□□□□□ -0.55
CLN3-264ENST00000637985 NDUFB6O95139 128 aa11.6□□□□□ -0.55
CLN3-264ENST00000637985 NUTF2P61970 127 aaKnown RBP11.6□□□□□ -0.55
CLN3-264ENST00000637985 MAGT1Q9H0U3 335 aa11.6□□□□□ -0.55
CLN3-264ENST00000637985 FLG2Q5D862 2391 aaPredicted RBP11.59□□□□□ -0.55
CLN3-264ENST00000637985 CENPXA8MT69 81 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 PRSS46E5RG02 174 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 WRBO00258 174 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 NKX2-1P43699 371 aaPredicted RBP11.59□□□□□ -0.55
CLN3-264ENST00000637985 LYZP61626 148 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 C6orf223Q8N319 242 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 COQ8AQ8NI60 647 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 C7orf50Q9BRJ6 194 aaKnown RBP11.59□□□□□ -0.55
CLN3-264ENST00000637985 C1QTNF4Q9BXJ3 329 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 CLEC5AQ9NY25 188 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 VPS13BQ7Z7G8 4022 aa11.59□□□□□ -0.55
CLN3-264ENST00000637985 IGKV1OR2-108A0A075B7D4 117 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 H3BMM0 161 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 ID1P41134 155 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 ID3Q02535 119 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 OR2F1Q13607 317 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 SPANXN5Q5MJ07 72 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 PPP1R14BQ96C90 147 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 SLC45A2Q9UMX9 530 aa11.58□□□□□ -0.56
CLN3-264ENST00000637985 STRAPQ9Y3F4 350 aaKnown RBP11.58□□□□□ -0.56
CLN3-264ENST00000637985 OR4E1P0C645 316 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 HLA-DRB4P13762 266 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 FAM3BP58499 235 aaPredicted RBP11.57□□□□□ -0.56
CLN3-264ENST00000637985 CNPY1Q3B7I2 92 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 SAMD13Q5VXD3 122 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 SDHCQ99643 169 aaPredicted RBP11.57□□□□□ -0.56
CLN3-264ENST00000637985 FLVCR2Q9UPI3 526 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 HLA-DRB4X5D2U9 266 aa11.57□□□□□ -0.56
CLN3-264ENST00000637985 ADAP1O75689 374 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 S100A7P31151 101 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 PSMB3P49720 205 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 OR8I2Q8N0Y5 310 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 BPIFCQ8NFQ6 507 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 WDR12Q9GZL7 423 aaKnown RBP11.56□□□□□ -0.56
CLN3-264ENST00000637985 NDUFA13Q9P0J0 144 aa11.56□□□□□ -0.56
CLN3-264ENST00000637985 NBDYA0A0U1RRE5 68 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 SPART-AS1P0CW21 52 aa11.55□□□□□ -0.56
CLN3-264ENST00000637985 BTCP35070 178 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms