RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FBXL17Q9UF56 701 aa12.48□□□□□ -0.41
TRIM28-215ENST00000601150 SLC45A2Q9UMX9 530 aa12.48□□□□□ -0.41
TRIM28-215ENST00000601150 CST7O76096 145 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 CYCSP99999 105 aaKnown RBP12.47□□□□□ -0.41
TRIM28-215ENST00000601150 SLC38A11Q08AI6 406 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 ZNF124Q15973 351 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 STPG3Q8N7X2 389 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 RETNQ9HD89 108 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 NRN1Q9NPD7 142 aa12.47□□□□□ -0.41
TRIM28-215ENST00000601150 LYRM2Q9NU23 88 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-215ENST00000601150 KIR2DL5BA0A0G2JN68 375 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 KIR2DL5BA0A0G2JPC4 375 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 ZNF688P0C7X2 276 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 RPL35AP18077 110 aaKnown RBP12.46□□□□□ -0.41
TRIM28-215ENST00000601150 ORM2P19652 201 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 S100A7P31151 101 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 KIR2DL5AQ8N109 375 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 OR1B1Q8NGR6 318 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 KIR2DL5BQ8NHK3 375 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 TMEM147Q9BVK8 224 aa12.46□□□□□ -0.41
TRIM28-215ENST00000601150 NBEAL2Q6ZNJ1 2754 aa12.46□□□□□ -0.42
TRIM28-215ENST00000601150 HUWE1Q7Z6Z7 4374 aaKnown RBP12.45□□□□□ -0.42
TRIM28-215ENST00000601150 UBE2CO00762 179 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 RLN2P04090 185 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 SULT1A1P50225 295 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 H2BFSP57053 126 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 LEMD1Q68G75 181 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 STX12Q86Y82 276 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 OR8I2Q8N0Y5 310 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 TMEM252Q8N6L7 170 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 TMEM217Q8N7C4 229 aa12.45□□□□□ -0.42
TRIM28-215ENST00000601150 IGSF23A1L1A6 192 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 LINC00869P0C866 280 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 S100A11P31949 105 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 PLP1P60201 277 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 HBG1P69891 147 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 HBG2P69892 147 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 ZNF546Q86UE3 836 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 SEPSECSQ9HD40 501 aaKnown RBP12.44□□□□□ -0.42
TRIM28-215ENST00000601150 UQCC1Q9NVA1 299 aa12.44□□□□□ -0.42
TRIM28-215ENST00000601150 ZNF98A6NK75 572 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 E5RGE8 158 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 AGPAT2O15120 278 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 HYPMO75409 117 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 RAP2BP61225 183 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 SNRPD3P62318 126 aaKnown RBP12.43□□□□□ -0.42
TRIM28-215ENST00000601150 LRRC37A5PQ49AS3 106 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 Q6ZWC4 215 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 SLC25A22Q9H936 323 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 DOK5Q9P104 306 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 HIGD1AQ9Y241 93 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 ALG5Q9Y673 324 aa12.43□□□□□ -0.42
TRIM28-215ENST00000601150 RAB31Q13636 194 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 VWC2Q2TAL6 325 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 PSMG4Q5JS54 123 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 PXDC1Q5TGL8 231 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 S100A7AQ86SG5 101 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 STHQ8IWL8 128 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 MGST2Q99735 147 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 OVOL2Q9BRP0 275 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 SLC25A31Q9H0C2 315 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 CSTL1Q9H114 145 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 SLC25A32Q9H2D1 315 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 OR5AC2Q9NZP5 309 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 TP53TG1Q9Y2A0 90 aa12.42□□□□□ -0.42
TRIM28-215ENST00000601150 H3BRN7 92 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 OR5G3P0C626 314 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 GALR1P47211 349 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 ATP6V1FQ16864 119 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 PPP1R1CQ8WVI7 109 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 GPR82Q96P67 336 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 SHANK2-AS3Q9BTD1 123 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 SCRT1Q9BWW7 348 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 SLC25A39Q9BZJ4 359 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-215ENST00000601150 ARL6Q9H0F7 186 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 EDA2RQ9HAV5 297 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 WDR83OSQ9Y284 106 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 AGRNO00468 2067 aa12.41□□□□□ -0.42
TRIM28-215ENST00000601150 UBE2L5PA0A1B0GUS4 154 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 H0YIZ8 118 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 SPRY2O43597 315 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 PET100P0DJ07 73 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 ID1P41134 155 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 CAMLGP49069 296 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 MEOX2P50222 304 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 DEFB135Q30KP9 77 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 SAMD13Q5VXD3 122 aa12.4□□□□□ -0.42
TRIM28-215ENST00000601150 KNCNA6PVL3 124 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 MPC2O95563 127 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 PSMB3P49720 205 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 EWSR1Q01844 656 aaKnown RBP eCLIP12.39□□□□□ -0.43
TRIM28-215ENST00000601150 ACTL10Q5JWF8 245 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 TRPT1Q86TN4 253 aaKnown RBP12.39□□□□□ -0.43
TRIM28-215ENST00000601150 UHRF2Q96PU4 802 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 RSG1Q9BU20 258 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 ARV1Q9H2C2 271 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 RNF24Q9Y225 148 aa12.39□□□□□ -0.43
TRIM28-215ENST00000601150 ISLRO14498 428 aa12.38□□□□□ -0.43
TRIM28-215ENST00000601150 SOCS3O14543 225 aa12.38□□□□□ -0.43
TRIM28-215ENST00000601150 NHLH2Q02577 135 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms