RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ATP5SQ99766 215 aa14.52□□□□□ -0.09
UPF1-209ENST00000600310 PXDC1Q5TGL8 231 aa14.51□□□□□ -0.09
UPF1-209ENST00000600310 OR1B1Q8NGR6 318 aa14.51□□□□□ -0.09
UPF1-209ENST00000600310 GLMPQ8WWB7 406 aa14.51□□□□□ -0.09
UPF1-209ENST00000600310 FXYD6-FXYD2A0A087WZ82 144 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 HYPMO75409 117 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 RPL29P47914 159 aaKnown RBP14.5□□□□□ -0.09
UPF1-209ENST00000600310 PRR20EP86478 221 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 PRR20CP86479 221 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 PRR20DP86480 221 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 PRR20BP86481 221 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 PRR20AP86496 221 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 OPCMLQ14982 345 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 C1orf194Q5T5A4 169 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 GTSCR1Q86UQ5 136 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 Q8N1Y9 231 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 NEURL2Q9BR09 285 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 SMIM3Q9BZL3 60 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 WDR61Q9GZS3 305 aaKnown RBP14.5□□□□□ -0.09
UPF1-209ENST00000600310 TNFSF18Q9UNG2 199 aa14.5□□□□□ -0.09
UPF1-209ENST00000600310 S100A7P31151 101 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 MIC13Q5XKP0 118 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 INO80EQ8NBZ0 244 aaPredicted RBP14.49□□□□□ -0.09
UPF1-209ENST00000600310 MRAPQ8TCY5 172 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 PPP1R14BQ96C90 147 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 NPCDR1Q9BY65 106 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 ARL6Q9H0F7 186 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 WFDC1Q9HC57 220 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 DOK5Q9P104 306 aa14.49□□□□□ -0.09
UPF1-209ENST00000600310 HELTA6NFD8 242 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 SMLR1H3BR10 107 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 OR5G3P0C626 314 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 AP2S1P53680 142 aaPredicted RBP14.48□□□□□ -0.09
UPF1-209ENST00000600310 RPL11P62913 178 aaKnown RBP14.48□□□□□ -0.09
UPF1-209ENST00000600310 PAFAH1B2P68402 229 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 Q6ZRG5 221 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 SLC39A9Q9NUM3 307 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 FBXL17Q9UF56 701 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 HIGD1AQ9Y241 93 aa14.48□□□□□ -0.09
UPF1-209ENST00000600310 IGKV3-7A0A075B6H7 116 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 TRAV2A0A0B4J234 112 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 RNF222A6NCQ9 220 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 OR4C46A6NHA9 309 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 ZNF98A6NK75 572 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 IFNA5P01569 189 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 CD7P09564 240 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 CD81P60033 236 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 B2MP61769 119 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 PATE2Q6UY27 113 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 SHANK2-AS3Q9BTD1 123 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 PARD6GQ9BYG4 376 aaPredicted RBP14.47□□□□□ -0.09
UPF1-209ENST00000600310 SLC25A39Q9BZJ4 359 aaPredicted RBP14.47□□□□□ -0.09
UPF1-209ENST00000600310 ARV1Q9H2C2 271 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 PXMP4Q9Y6I8 212 aa14.47□□□□□ -0.09
UPF1-209ENST00000600310 ELOA3CA0A087WX78 387 aaPredicted RBP14.46□□□□□ -0.09
UPF1-209ENST00000600310 H3BRN7 92 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 S100A7AQ86SG5 101 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 GBGT1Q8N5D6 347 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 SCGB1C1Q8TD33 95 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 ST6GAL2Q96JF0 529 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 MS4A6AQ9H2W1 248 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 SMAD5-AS1Q9Y6J3 95 aa14.46□□□□□ -0.09
UPF1-209ENST00000600310 hCG_2014768A0A024R1R8 64 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 COX7A2P2O60397 106 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 TFPI2P48307 235 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 DEFB121Q5J5C9 76 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 SIGLEC15Q6ZMC9 328 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 OR8I2Q8N0Y5 310 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 ZNF709Q8N972 641 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 TMEM37Q8WXS4 190 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 UHRF2Q96PU4 802 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 SCRT1Q9BWW7 348 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 DNAJC4Q9NNZ3 241 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 KCNIP2Q9NS61 270 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 C19orf73Q9NVV2 129 aa14.45□□□□□ -0.1
UPF1-209ENST00000600310 C17orf112F2Z3M2 114 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 DNASE2O00115 360 aaPredicted RBP14.44□□□□□ -0.1
UPF1-209ENST00000600310 ARPC5O15511 151 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 ZNF266Q14584 549 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 WFDC3Q8IUB2 231 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 STXBP6Q8NFX7 210 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 OR1L4Q8NGR5 311 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 RNF24Q9Y225 148 aa14.44□□□□□ -0.1
UPF1-209ENST00000600310 K7EQG2 157 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 C10orf113Q5VZT2 155 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 TCTE3Q8IZS6 198 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 OR11H4Q8NGC9 324 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 DCANP1Q8TF63 244 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 GPR82Q96P67 336 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 PFDN5Q99471 154 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 FAM110AQ9BQ89 295 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 RSG1Q9BU20 258 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 MFFQ9GZY8 342 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 SLC25A32Q9H2D1 315 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 SLC25A22Q9H936 323 aa14.43□□□□□ -0.1
UPF1-209ENST00000600310 HMSDA8MTL9 139 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 A8MZ25 164 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 OR11H12B2RN74 326 aa14.42□□□□□ -0.1
UPF1-209ENST00000600310 CMC4P56277 68 aaPredicted RBP14.42□□□□□ -0.1
UPF1-209ENST00000600310 LEMD1Q68G75 181 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms