RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 NPCDR1Q9BY65 106 aa12.65□□□□□ -0.38
USHBP1-210ENST00000600286 PARD6GQ9BYG4 376 aaPredicted RBP12.65□□□□□ -0.38
USHBP1-210ENST00000600286 HIGD1AQ9Y241 93 aa12.65□□□□□ -0.38
USHBP1-210ENST00000600286 DNAH3Q8TD57 4116 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 IGHV3OR16-13A0A075B7E8 117 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 IGHV3-74A0A0B4J1X5 117 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 A0A1B0GVG6 124 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 HELTA6NFD8 242 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 COX7A2P2O60397 106 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 PLP1P60201 277 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 B2MP61769 119 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 GUCA2BQ16661 112 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 CD300EQ496F6 205 aaPredicted RBP12.64□□□□□ -0.39
USHBP1-210ENST00000600286 STPG3Q8N7X2 389 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 PFDN5Q99471 154 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 NEURL2Q9BR09 285 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 GGTLC1Q9BX51 225 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 VSIRQ9H7M9 311 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 MLXQ9UH92 298 aa12.64□□□□□ -0.39
USHBP1-210ENST00000600286 G3V3Q6 166 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 OPCMLQ14982 345 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 C1orf194Q5T5A4 169 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 MIC13Q5XKP0 118 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 ADAMTSL5Q6ZMM2 481 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 TMEM182Q6ZP80 229 aaPredicted RBP12.63□□□□□ -0.39
USHBP1-210ENST00000600286 ST8SIA2Q92186 375 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 ZNF414Q96IQ9 312 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 HYLS1Q96M11 299 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 DNAJC4Q9NNZ3 241 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 SLC39A9Q9NUM3 307 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 DOK5Q9P104 306 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 ZNF256Q9Y2P7 627 aaPredicted RBP12.63□□□□□ -0.39
USHBP1-210ENST00000600286 PXMP4Q9Y6I8 212 aa12.63□□□□□ -0.39
USHBP1-210ENST00000600286 IGHV3-66A0A0C4DH42 116 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 RNF222A6NCQ9 220 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 DNASE2O00115 360 aaPredicted RBP12.62□□□□□ -0.39
USHBP1-210ENST00000600286 PFDN1O60925 122 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 JTBO76095 146 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 C1QBP02746 253 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 EDN2P20800 178 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 EGFEM1PQ0D2K5 195 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 ZNF345Q14585 488 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 C10orf113Q5VZT2 155 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 TCF24Q7RTU0 167 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 OR8I2Q8N0Y5 310 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 GPR82Q96P67 336 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 RNF2Q99496 336 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 ARV1Q9H2C2 271 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 WFDC1Q9HC57 220 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 U3KQE9 123 aa12.62□□□□□ -0.39
USHBP1-210ENST00000600286 KANTRA0A1W2PQU2 76 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 BUB3O43684 328 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 APOHP02749 345 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-210ENST00000600286 GP9P14770 177 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 C4BPBP20851 252 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 EIF5AP63241 154 aaKnown RBP12.61□□□□□ -0.39
USHBP1-210ENST00000600286 PRR20EP86478 221 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 PRR20CP86479 221 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 PRR20DP86480 221 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 PRR20BP86481 221 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 PRR20AP86496 221 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 DEFA6Q01524 100 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 BEAN1Q3B7T3 259 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 ZFP69Q49AA0 526 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 C16orf54Q6UWD8 224 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 GTSCR1Q86UQ5 136 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 KCNRGQ8N5I3 272 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 GNPNAT1Q96EK6 184 aaPredicted RBP12.61□□□□□ -0.39
USHBP1-210ENST00000600286 ARPC5LQ9BPX5 153 aa12.61□□□□□ -0.39
USHBP1-210ENST00000600286 OR4C46A6NHA9 309 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 TSPAN4O14817 238 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 GALR1P47211 349 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 CMC4P56277 68 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-210ENST00000600286 KPRPQ5T749 579 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-210ENST00000600286 TMEM61Q8N0U2 210 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 OR11H4Q8NGC9 324 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 GATAD1Q8WUU5 269 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 SPAG8Q99932 426 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-210ENST00000600286 SLC25A39Q9BZJ4 359 aaPredicted RBP12.6□□□□□ -0.39
USHBP1-210ENST00000600286 SLC25A22Q9H936 323 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 TIMM9Q9Y5J7 89 aa12.6□□□□□ -0.39
USHBP1-210ENST00000600286 ZNF98A6NK75 572 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 FFAR4Q5NUL3 377 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 SIGLEC15Q6ZMC9 328 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 LINC00305Q7Z4B0 112 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 HSD17B11Q8NBQ5 300 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 SHANK2-AS3Q9BTD1 123 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 RSG1Q9BU20 258 aa12.59□□□□□ -0.39
USHBP1-210ENST00000600286 IGKV3-7A0A075B6H7 116 aa12.58□□□□□ -0.4
USHBP1-210ENST00000600286 MBP02144 154 aa12.58□□□□□ -0.4
USHBP1-210ENST00000600286 RPL7P18124 248 aaKnown RBP12.58□□□□□ -0.4
USHBP1-210ENST00000600286 ACOT6Q3I5F7 207 aaPredicted RBP12.58□□□□□ -0.4
USHBP1-210ENST00000600286 RPL7L1Q6DKI1 246 aaKnown RBP12.58□□□□□ -0.4
USHBP1-210ENST00000600286 SELENOKQ9Y6D0 94 aa12.58□□□□□ -0.4
USHBP1-210ENST00000600286 IZUMO1RA6ND01 250 aa12.57□□□□□ -0.4
USHBP1-210ENST00000600286 ZNF785A8K8V0 405 aa12.57□□□□□ -0.4
USHBP1-210ENST00000600286 H3BRN7 92 aa12.57□□□□□ -0.4
USHBP1-210ENST00000600286 KRTAP10-11P60412 298 aa12.57□□□□□ -0.4
USHBP1-210ENST00000600286 SERF2P84101 59 aa12.57□□□□□ -0.4
USHBP1-210ENST00000600286 SAMD13Q5VXD3 122 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms