RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 GRAMD2BQ96HH9 432 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 ATP5SQ99766 215 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 GGTLC1Q9BX51 225 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 BUB3O43684 328 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 MPDU1O75352 247 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 OPCMLQ14982 345 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 GUCA2BQ16661 112 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 TCF24Q7RTU0 167 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 GLMPQ8WWB7 406 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 SPAG8Q99932 426 aaPredicted RBP13.63□□□□□ -0.23
LIG1-216ENST00000598938 PFDN2Q9UHV9 154 aa13.63□□□□□ -0.23
LIG1-216ENST00000598938 FXYD6-FXYD2A0A087WZ82 144 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 DFFBO76075 338 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 ORM2P19652 201 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 PRR20EP86478 221 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 PRR20CP86479 221 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 PRR20DP86480 221 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 PRR20BP86481 221 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 PRR20AP86496 221 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 OR1B1Q8NGR6 318 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 SMIM3Q9BZL3 60 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 WDR61Q9GZS3 305 aaKnown RBP13.62□□□□□ -0.23
LIG1-216ENST00000598938 TNFSF18Q9UNG2 199 aa13.62□□□□□ -0.23
LIG1-216ENST00000598938 DNAH9Q9NYC9 4486 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 RNF222A6NCQ9 220 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 SMLR1H3BR10 107 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 HYPMO75409 117 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 RPL29P47914 159 aaKnown RBP13.61□□□□□ -0.23
LIG1-216ENST00000598938 PXDC1Q5TGL8 231 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 Q8N1Y9 231 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 NPCDR1Q9BY65 106 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 ARL6Q9H0F7 186 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 WFDC1Q9HC57 220 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 DOK5Q9P104 306 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 SORL1Q92673 2214 aa13.61□□□□□ -0.23
LIG1-216ENST00000598938 NHLRC4P0CG21 123 aaPredicted RBP13.6□□□□□ -0.23
LIG1-216ENST00000598938 C1orf194Q5T5A4 169 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 MIC13Q5XKP0 118 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 PATE2Q6UY27 113 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 GTSCR1Q86UQ5 136 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 INO80EQ8NBZ0 244 aaPredicted RBP13.6□□□□□ -0.23
LIG1-216ENST00000598938 NEURL2Q9BR09 285 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 PARD6GQ9BYG4 376 aaPredicted RBP13.6□□□□□ -0.23
LIG1-216ENST00000598938 FBXL17Q9UF56 701 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 HIGD1AQ9Y241 93 aa13.6□□□□□ -0.23
LIG1-216ENST00000598938 HELTA6NFD8 242 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 H3BRN7 92 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 CD7P09564 240 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 PPP1R14BQ96C90 147 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 ST6GAL2Q96JF0 529 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 MS4A6AQ9H2W1 248 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 PXMP4Q9Y6I8 212 aa13.59□□□□□ -0.23
LIG1-216ENST00000598938 hCG_2014768A0A024R1R8 64 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 IGKV3-7A0A075B6H7 116 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 TRAV2A0A0B4J234 112 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 OR4C46A6NHA9 309 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 ZNF98A6NK75 572 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 IFNA5P01569 189 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 OR5G3P0C626 314 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 S100A7P31151 101 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 CD81P60033 236 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 B2MP61769 119 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 SIGLEC15Q6ZMC9 328 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 SHANK2-AS3Q9BTD1 123 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 SLC25A39Q9BZJ4 359 aaPredicted RBP13.58□□□□□ -0.24
LIG1-216ENST00000598938 ARV1Q9H2C2 271 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 SLC39A9Q9NUM3 307 aa13.58□□□□□ -0.24
LIG1-216ENST00000598938 STAB2Q8WWQ8 2551 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 ELOA3CA0A087WX78 387 aaPredicted RBP13.57□□□□□ -0.24
LIG1-216ENST00000598938 C3orf84H3BNL1 204 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 AP2S1P53680 142 aaPredicted RBP13.57□□□□□ -0.24
LIG1-216ENST00000598938 RPL11P62913 178 aaKnown RBP13.57□□□□□ -0.24
LIG1-216ENST00000598938 PAFAH1B2P68402 229 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 Q6ZRG5 221 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 S100A7AQ86SG5 101 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 GBGT1Q8N5D6 347 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 TMEM37Q8WXS4 190 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 UHRF2Q96PU4 802 aa13.57□□□□□ -0.24
LIG1-216ENST00000598938 COX7A2P2O60397 106 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 TFPI2P48307 235 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 ZNF709Q8N972 641 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 OR11H4Q8NGC9 324 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 SCGB1C1Q8TD33 95 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 SCRT1Q9BWW7 348 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 KCNIP2Q9NS61 270 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 C19orf73Q9NVV2 129 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 U3KQK5 164 aa13.56□□□□□ -0.24
LIG1-216ENST00000598938 A0A1B0GVG6 124 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 HMSDA8MTL9 139 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 C17orf112F2Z3M2 114 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 DNASE2O00115 360 aaPredicted RBP13.55□□□□□ -0.24
LIG1-216ENST00000598938 ARPC5O15511 151 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 ZNF266Q14584 549 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 C10orf113Q5VZT2 155 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 LEMD1Q68G75 181 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 TCTE3Q8IZS6 198 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 OR8I2Q8N0Y5 310 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 STXBP6Q8NFX7 210 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 OR1L4Q8NGR5 311 aa13.55□□□□□ -0.24
LIG1-216ENST00000598938 DCANP1Q8TF63 244 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms