RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TMEM231Q9H6L2 316 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 KCNIP2Q9NS61 270 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 PFDN2Q9UHV9 154 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 TRAV25A0A0B4J276 109 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 BUB3O43684 328 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 HYPMO75409 117 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 CD5P06127 495 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 CXCL2P19875 107 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 B2MP61769 119 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 BEAN1Q3B7T3 259 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 SCGB1C1Q8TD33 95 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 NARS2Q96I59 477 aaKnown RBP13.72□□□□□ -0.21
CCDC40-213ENST00000574933 PBDC1Q9BVG4 233 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 SLC39A9Q9NUM3 307 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 ZMAT5Q9UDW3 170 aaKnown RBP13.72□□□□□ -0.21
CCDC40-213ENST00000574933 PXMP4Q9Y6I8 212 aa13.72□□□□□ -0.21
CCDC40-213ENST00000574933 C17orf112F2Z3M2 114 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 S100A7P31151 101 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 CD300EQ496F6 205 aaPredicted RBP13.71□□□□□ -0.21
CCDC40-213ENST00000574933 FAM90A2PQ658T7 463 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 C16orf54Q6UWD8 224 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 PATE2Q6UY27 113 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 CYTL1Q9NRR1 136 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 TIMM9Q9Y5J7 89 aa13.71□□□□□ -0.21
CCDC40-213ENST00000574933 ELOA3CA0A087WX78 387 aaPredicted RBP13.7□□□□□ -0.22
CCDC40-213ENST00000574933 IGHV3-49A0A0A0MS15 119 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 ORM2P19652 201 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 C1orf194Q5T5A4 169 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 LCN12Q6JVE5 192 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 Q6ZRG5 221 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 ZNF709Q8N972 641 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 OR1B1Q8NGR6 318 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 GLMPQ8WWB7 406 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 GRAMD2BQ96HH9 432 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 RNF2Q99496 336 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 ARL6Q9H0F7 186 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 HIGD1AQ9Y241 93 aa13.7□□□□□ -0.22
CCDC40-213ENST00000574933 IGHV3OR16-13A0A075B7E8 117 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 BORCS7-ASMTA0A0B4J1R7 106 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 IGHV3-74A0A0B4J1X5 117 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 H3BRN7 92 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 TSPAN4O14817 238 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 RPL7L1Q6DKI1 246 aaKnown RBP13.69□□□□□ -0.22
CCDC40-213ENST00000574933 LAMTOR1Q6IAA8 161 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 S100A7AQ86SG5 101 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 TMEM61Q8N0U2 210 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 OR1L4Q8NGR5 311 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 TMEM37Q8WXS4 190 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 PFDN5Q99471 154 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 ARPC5LQ9BPX5 153 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 PSMG3Q9BT73 122 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-213ENST00000574933 SHANK2-AS3Q9BTD1 123 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 RSG1Q9BU20 258 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 SLC25A39Q9BZJ4 359 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-213ENST00000574933 ARV1Q9H2C2 271 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 DNAJC4Q9NNZ3 241 aa13.69□□□□□ -0.22
CCDC40-213ENST00000574933 IZUMO1RA6ND01 250 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 ZNF98A6NK75 572 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 ZNF785A8K8V0 405 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 JTBO76095 146 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 KRTAP10-11P60412 298 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 LGALSLQ3ZCW2 172 aaPredicted RBP13.68□□□□□ -0.22
CCDC40-213ENST00000574933 GATAD1Q8WUU5 269 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 DOK5Q9P104 306 aa13.68□□□□□ -0.22
CCDC40-213ENST00000574933 BCL2L11O43521 198 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 COX7A2P2O60397 106 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 OR5G3P0C626 314 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 ZFP69Q49AA0 526 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 TMUB2Q71RG4 321 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 TCF24Q7RTU0 167 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 OR2G3Q8NGZ4 309 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 RNF24Q9Y225 148 aa13.67□□□□□ -0.22
CCDC40-213ENST00000574933 IGHV3-66A0A0C4DH42 116 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 HELTA6NFD8 242 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 ATP6V0CP27449 155 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 C10orf113Q5VZT2 155 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 RBPMS2Q6ZRY4 209 aaKnown RBP13.66□□□□□ -0.22
CCDC40-213ENST00000574933 HSD17B11Q8NBQ5 300 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 PPP1R14BQ96C90 147 aa13.66□□□□□ -0.22
CCDC40-213ENST00000574933 GNPNAT1Q96EK6 184 aaPredicted RBP13.66□□□□□ -0.22
CCDC40-213ENST00000574933 SPAG8Q99932 426 aaPredicted RBP13.66□□□□□ -0.22
CCDC40-213ENST00000574933 ZNF256Q9Y2P7 627 aaPredicted RBP13.66□□□□□ -0.22
CCDC40-213ENST00000574933 TRAV2A0A0B4J234 112 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 KANTRA0A1W2PQU2 76 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 SERF2P84101 59 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 LINC00305Q7Z4B0 112 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 GPR82Q96P67 336 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 UHRF2Q96PU4 802 aa13.65□□□□□ -0.22
CCDC40-213ENST00000574933 GP9P14770 177 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 FFAR4Q5NUL3 377 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 SIGLEC15Q6ZMC9 328 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 OR8I2Q8N0Y5 310 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 C9orf62Q8N4C0 152 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 SCRT1Q9BWW7 348 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 RFNGQ9Y644 331 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 SELENOKQ9Y6D0 94 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 DNAH3Q8TD57 4116 aa13.64□□□□□ -0.23
CCDC40-213ENST00000574933 GCSAMLQ5JQS6 135 aa13.63□□□□□ -0.23
CCDC40-213ENST00000574933 SLC25A32Q9H2D1 315 aa13.63□□□□□ -0.23
CCDC40-213ENST00000574933 MRPS12O15235 138 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms