RNA–Protein interactions for RNA: ENST00000565580.3

TCF4-229, Transcript of transcription factor 4, human

TSL 4

Gene TCF4, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-229	ENST00000565580	SMCO1	Q147U7	214 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	MORN3	Q6PF18	240 aa	Predicted RBP	4.6	□□□□□ -1.67
TCF4-229	ENST00000565580		Q6ZTC4	211 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	CSNK1G2-AS1	Q8NCQ2	148 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	OR51G1	Q8NGK1	321 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	DTD1	Q8TEA8	209 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	C2CD4C	Q8TF44	421 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	PPP1R14B	Q96C90	147 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	RBKS	Q9H477	322 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	MCUB	Q9NWR8	336 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	HSPB7	Q9UBY9	170 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	APLN	Q9ULZ1	77 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	CELA1	Q9UNI1	258 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	DNAH2	Q9P225	4427 aa		4.6	□□□□□ -1.67
TCF4-229	ENST00000565580	IGKV1D-37	A0A075B6S9	117 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580		A0A0B4J2A0	478 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	FABP12	A6NFH5	140 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	IGLL5	B9A064	214 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580		H3BMM0	161 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	RD3L	P0DJH9	198 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	MIF	P14174	115 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	RYR1	P21817	5038 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	HLA-DMB	P28068	263 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	CCR6	P51684	374 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	ZNF90	Q03938	601 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	KLF9	Q13886	244 aa	Predicted RBP	4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	GAMT	Q14353	236 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	TMEM41B	Q5BJD5	291 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	GDF5OS	Q5U4N7	250 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	ETFRF1	Q6IPR1	90 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	SIGLEC15	Q6ZMC9	328 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	ZNF767P	Q75MW2	155 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	LGI3	Q8N145	548 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	S100Z	Q8WXG8	99 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	TRIM63	Q969Q1	353 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	RNF125	Q96EQ8	232 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	HRH4	Q9H3N8	390 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	NRN1	Q9NPD7	142 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	XCL2	Q9UBD3	114 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	SHPK	Q9UHJ6	478 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	SCP2D1	Q9UJQ7	156 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	TBC1D24	Q9ULP9	559 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	RABL2B	Q9UNT1	228 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	KCNIP3	Q9Y2W7	256 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580		U3KQ87	197 aa		4.59	□□□□□ -1.67
TCF4-229	ENST00000565580	FAT2	Q9NYQ8	4349 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	ZFP92	A6NM28	416 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	C11orf94	C9JXX5	98 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	PITX3	O75364	302 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	IAPP	P10997	89 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	EIF2B2	P49770	351 aa	Known RBP	4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	AP2S1	P53680	142 aa	Predicted RBP	4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	OR2F1	Q13607	317 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	TMED4	Q7Z7H5	227 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	NOXA1	Q86UR1	476 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	OR1S1	Q8NH92	325 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	MCFD2	Q8NI22	146 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	SCGB3A2	Q96PL1	93 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	PBDC1	Q9BVG4	233 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	SCRT1	Q9BWW7	348 aa		4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	WDR12	Q9GZL7	423 aa	Known RBP	4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	SEPSECS	Q9HD40	501 aa	Known RBP	4.58	□□□□□ -1.68
TCF4-229	ENST00000565580	IGHV4-4	A0A075B6R2	117 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	IGKV1OR2-108	A0A075B7D4	117 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	TRAV10	A0A0B4J240	114 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	SOCS3	O14543	225 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	IGKV3-20	P01619	116 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	SLPI	P03973	132 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	ANXA3	P12429	323 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	HLA-DRB4	P13762	266 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	GPX4	P36969	197 aa	Predicted RBP	4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	NKX2-1	P43699	371 aa	Predicted RBP	4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	TCTA	P57738	103 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	FXYD7	P58549	80 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	LYZ	P61626	148 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	SNRPD3	P62318	126 aa	Known RBP	4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	SRPX	P78539	464 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	ZNF79	Q15937	498 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	C12orf74	Q32Q52	190 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	PYDC2	Q56P42	97 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	OR8G2P	Q6IF36	304 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	SLC35E1	Q96K37	410 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	LINC00052	Q96N35	136 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	MAGT1	Q9H0U3	335 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	CACFD1	Q9UGQ2	172 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580		V9GYH0	126 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	HLA-DRB4	X5D2U9	266 aa		4.57	□□□□□ -1.68
TCF4-229	ENST00000565580	DYNC1H1	Q14204	4646 aa	Known RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	DEFB131B	A0A096LNP1	70 aa		4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	DUXB	A0A1W2PPF3	345 aa		4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	ZNF705F	A8MVS1	300 aa	Predicted RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	PRSS46	E5RG02	174 aa		4.56	□□□□□ -1.68
TCF4-229	ENST00000565580		F6UB75	175 aa		4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	ZNF705D	P0CH99	300 aa	Predicted RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	ZNF705B	P0CI00	300 aa	Predicted RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	FAU	P35544	74 aa	Known RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	ATP5I	P56385	69 aa	Predicted RBP	4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	PPP1R1A	Q13522	171 aa		4.56	□□□□□ -1.68
TCF4-229	ENST00000565580	ZNF846	Q147U1	533 aa		4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms