RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CSTL1Q9H114 145 aa9.9□□□□□ -0.82
CLK3-213ENST00000563842 NRN1Q9NPD7 142 aa9.9□□□□□ -0.82
CLK3-213ENST00000563842 LSM5Q9Y4Y9 91 aaKnown RBP9.9□□□□□ -0.82
CLK3-213ENST00000563842 C7orf66A4D0T2 115 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 INMT-MINDY4F8WBC2 141 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 K7EPK0 472 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 SPRY2O43597 315 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 ZNF688P0C7X2 276 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 IFITM3Q01628 133 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 OVOL2Q9BRP0 275 aa9.89□□□□□ -0.83
CLK3-213ENST00000563842 BCAP31P51572 246 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 RRAS2P62070 204 aaPredicted RBP9.88□□□□□ -0.83
CLK3-213ENST00000563842 ZNF124Q15973 351 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 DEFB135Q30KP9 77 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 TMEM41BQ5BJD5 291 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 SAMD13Q5VXD3 122 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 LEMD1Q68G75 181 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 TEPPQ6URK8 271 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 CYP2G1PQ6ZSU1 146 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 NRARPQ7Z6K4 114 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 OR8I2Q8N0Y5 310 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 RNF183Q96D59 192 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 TMEM147Q9BVK8 224 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 RNF24Q9Y225 148 aa9.88□□□□□ -0.83
CLK3-213ENST00000563842 DEDDO75618 318 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 ORM2P19652 201 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 ID1P41134 155 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 CAV2P51636 162 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 S100A10P60903 97 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 RAP2BP61225 183 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 CYCSP99999 105 aaKnown RBP9.87□□□□□ -0.83
CLK3-213ENST00000563842 FAM24BQ8N5W8 94 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 GATAD1Q8WUU5 269 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 GPR82Q96P67 336 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 MARVELD1Q9BSK0 173 aa9.87□□□□□ -0.83
CLK3-213ENST00000563842 CCNKO75909 580 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 RLN2P04090 185 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 SPP1P10451 314 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 GALR1P47211 349 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 MEOX2P50222 304 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 RAB31Q13636 194 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 PSMG4Q5JS54 123 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 CASC10Q5T4H9 136 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 MORN3Q6PF18 240 aaPredicted RBP9.86□□□□□ -0.83
CLK3-213ENST00000563842 OR1B1Q8NGR6 318 aa9.86□□□□□ -0.83
CLK3-213ENST00000563842 BIRC6Q9NR09 4857 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 DNAH7Q8WXX0 4024 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 ZNF98A6NK75 572 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 GOSR2O14653 212 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 HYPMO75409 117 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 GATA2P23769 480 aaPredicted RBP9.85□□□□□ -0.83
CLK3-213ENST00000563842 PLP1P60201 277 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 HBG1P69891 147 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 HBG2P69892 147 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 SLC38A11Q08AI6 406 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 IL15RAQ13261 267 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 RAB32Q13637 225 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 PXDC1Q5TGL8 231 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 ZNF546Q86UE3 836 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 STX12Q86Y82 276 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 LYRM2Q9NU23 88 aaPredicted RBP9.85□□□□□ -0.83
CLK3-213ENST00000563842 HIGD1AQ9Y241 93 aa9.85□□□□□ -0.83
CLK3-213ENST00000563842 CA1P00915 261 aaPredicted RBP9.84□□□□□ -0.83
CLK3-213ENST00000563842 OR5G3P0C626 314 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 LINC00869P0C866 280 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 S100A11P31949 105 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 PSMB3P49720 205 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 NUTF2P61970 127 aaKnown RBP9.84□□□□□ -0.83
CLK3-213ENST00000563842 ACTL10Q5JWF8 245 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 TMEM182Q6ZP80 229 aaPredicted RBP9.84□□□□□ -0.83
CLK3-213ENST00000563842 TRPT1Q86TN4 253 aaKnown RBP9.84□□□□□ -0.83
CLK3-213ENST00000563842 TMEM217Q8N7C4 229 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 NMES1Q9C002 83 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 C11orf1Q9H5F2 150 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 SLC25A22Q9H936 323 aa9.84□□□□□ -0.83
CLK3-213ENST00000563842 FAM24AA6NFZ4 105 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 KNCNA6PVL3 124 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 ISLRO14498 428 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 CST7O76096 145 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 SULT1A1P50225 295 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 ARL16Q0P5N6 197 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 ATP6V1FQ16864 119 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 RARRES2Q99969 163 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 SLC25A39Q9BZJ4 359 aaPredicted RBP9.83□□□□□ -0.84
CLK3-213ENST00000563842 ARL6Q9H0F7 186 aa9.83□□□□□ -0.84
CLK3-213ENST00000563842 E5RGE8 158 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 H3BRN7 92 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 AGPAT2O15120 278 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 SSNA1O43805 119 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 RPL7P18124 248 aaKnown RBP9.82□□□□□ -0.84
CLK3-213ENST00000563842 ATF4P18848 351 aaPredicted RBP9.82□□□□□ -0.84
CLK3-213ENST00000563842 SPATA31B1PQ5VZV4 182 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 ZFAND6Q6FIF0 208 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 TMEM252Q8N6L7 170 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 LINC00052Q96N35 136 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 SHANK2-AS3Q9BTD1 123 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 C1QTNF4Q9BXJ3 329 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 SLC25A31Q9H0C2 315 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 SLC25A32Q9H2D1 315 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 UQCC1Q9NVA1 299 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms