RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CACFD1Q9UGQ2 172 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 FAT2Q9NYQ8 4349 aa8.32□□□□□ -1.08
USP3-220ENST00000561381 DNAH2Q9P225 4427 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 IGKV1OR2-108A0A075B7D4 117 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 KRTAP4-8A0A0G2JLE6 195 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 F6UB75 175 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 M0R2N4 97 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 PITX3O75364 302 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 TNFSF8P32971 234 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 GPX4P36969 197 aaPredicted RBP8.31□□□□□ -1.08
USP3-220ENST00000561381 FOXI2Q6ZQN5 318 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 POM121L12Q8N7R1 296 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 OR4B1Q8NGF8 309 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 RAB2BQ8WUD1 216 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 SLC35E1Q96K37 410 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 NEU1Q99519 415 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 NDUFAF3Q9BU61 184 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 SLIRPQ9GZT3 109 aaKnown RBP8.31□□□□□ -1.08
USP3-220ENST00000561381 SLC35B3Q9H1N7 401 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 SAV1Q9H4B6 383 aaPredicted RBP8.31□□□□□ -1.08
USP3-220ENST00000561381 RABL2AQ9UBK7 228 aaPredicted RBP8.31□□□□□ -1.08
USP3-220ENST00000561381 RSL24D1Q9UHA3 163 aaKnown RBP8.31□□□□□ -1.08
USP3-220ENST00000561381 RABL2BQ9UNT1 228 aa8.31□□□□□ -1.08
USP3-220ENST00000561381 A0A1B0GVY2 172 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 FABP12A6NFH5 140 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 SPART-AS1P0CW21 52 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 ANXA3P12429 323 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 NUP62P37198 522 aaPredicted RBP8.3□□□□□ -1.08
USP3-220ENST00000561381 ID1P41134 155 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 PSMB3P49720 205 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 SRPXP78539 464 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 C1orf194Q5T5A4 169 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 TMED4Q7Z7H5 227 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 COQ8AQ8NI60 647 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 C20orf173Q96LM9 149 aa8.3□□□□□ -1.08
USP3-220ENST00000561381 PAIP2BQ9ULR5 123 aaKnown RBP8.3□□□□□ -1.08
USP3-220ENST00000561381 SNRPGP15A8MWD9 76 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 RTL8CO15255 209 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 P0DMU3 169 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 FAM231AP0DMU4 169 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 FAM231CP0DMU5 169 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 TMBIM6P55061 237 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 ATP5IP56385 69 aaPredicted RBP8.29□□□□□ -1.08
USP3-220ENST00000561381 ZNF79Q15937 498 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 FAM222AQ5U5X8 452 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 FAM78BQ5VT40 261 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 LINC00336Q6ZUF6 198 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 OR8I2Q8N0Y5 310 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 C1orf158Q8N1D5 194 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 TRIM63Q969Q1 353 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 PPP1R14BQ96C90 147 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 C17orf77Q96MU5 243 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 TRGV9Q99603 122 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 DKK2Q9UBU2 259 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 PFDN2Q9UHV9 154 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 DNAH17Q9UFH2 4485 aa8.29□□□□□ -1.08
USP3-220ENST00000561381 PCLOQ9Y6V0 5065 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 SMIM9A6NGZ8 99 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 H3BMQ9 156 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 VAMP1P23763 118 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 RAB11AP62491 216 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 PSG9Q00887 426 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 TMEM182Q6ZP80 229 aaPredicted RBP8.28□□□□□ -1.08
USP3-220ENST00000561381 THAP8Q8NA92 274 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 CLUHP3Q96NS8 147 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 MAGT1Q9H0U3 335 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 SLC25A32Q9H2D1 315 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 RFNGQ9Y644 331 aa8.28□□□□□ -1.08
USP3-220ENST00000561381 DYNC1H1Q14204 4646 aaKnown RBP8.28□□□□□ -1.08
USP3-220ENST00000561381 IGLV2-18A0A075B6J9 118 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 A0A0J9YX75 114 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 DUXBA0A1W2PPF3 345 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 TMEM189A5PLL7 270 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 PRSS46E5RG02 174 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 ISLRO14498 428 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 PRM2P04554 102 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 FABP1P07148 127 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 HTN3P15516 51 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 GATA2P23769 480 aaPredicted RBP8.27□□□□□ -1.09
USP3-220ENST00000561381 PAX9P55771 341 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 TMEM128Q5BJH2 165 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 EBLN2Q6P2I7 272 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 MCFD2Q8NI22 146 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 C16orf92Q96LL3 132 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 BCL7BQ9BQE9 202 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 NIPSNAP3BQ9BS92 247 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 SLC25A22Q9H936 323 aa8.27□□□□□ -1.09
USP3-220ENST00000561381 YTHDF2Q9Y5A9 579 aaKnown RBP8.27□□□□□ -1.09
USP3-220ENST00000561381 LOC102723971A0A1B0GUV8 181 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 PRSS29PA6NIE9 313 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 ZNF98A6NK75 572 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 WRBO00258 174 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 SLC25A6P12236 298 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 FAUP35544 74 aaKnown RBP8.26□□□□□ -1.09
USP3-220ENST00000561381 PPP1R1AQ13522 171 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 PYDC2Q56P42 97 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 SPATA31B1PQ5VZV4 182 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 IGFL4Q6B9Z1 124 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 AMTNQ6UX39 209 aa8.26□□□□□ -1.09
USP3-220ENST00000561381 TOMM5Q8N4H5 51 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms