RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DUXBA0A1W2PPF3 345 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 IGKV2-29A2NJV5 120 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 C7orf71A4D174 169 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 RIIAD1A6NNX1 92 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 E5RI56 91 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 C19orf84I3L1E1 186 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 K7ERJ3 54 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 MRPS14O60783 128 aaKnown RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 TIMM17BO60830 172 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 CSN2P05814 226 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 CRHP06850 196 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 BRS3P32247 399 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 DYNLT3P51808 116 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 TMBIM6P55061 237 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 ARPP19P56211 112 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 VBP1P61758 197 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 RHOGP84095 191 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 MSMO1Q15800 293 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 LTC4SQ16873 150 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 SPANXN5Q5MJ07 72 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 C3orf33Q6P1S2 294 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 C22orf39Q6P5X5 142 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 UNQ6190/PRO20217Q6UXQ8 127 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 RPS19BP1Q86WX3 136 aaKnown RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 PHF13Q86YI8 300 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 LINC00301Q8NCQ3 95 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 OR2T35Q8NGX2 323 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 OR2T10Q8NGZ9 312 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 SFT2D1Q8WV19 159 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 ZHX1-C8orf76Q96EF9 292 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 GPX7Q96SL4 187 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 SLC25A21Q9BQT8 299 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 C6orf62Q9GZU0 229 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 SH3BGRL3Q9H299 93 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 MIXL1Q9H2W2 232 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 LYRM2Q9NU23 88 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 OR5AC2Q9NZP5 309 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 SSR3Q9UNL2 185 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 ASB4Q9Y574 426 aa0.54□□□□□ -2.32
USP3-209ENST00000558925 N4BP2Q86UW6 1770 aaPredicted RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 ZFC3H1O60293 1989 aaKnown RBP0.54□□□□□ -2.32
USP3-209ENST00000558925 TNRC6BQ9UPQ9 1833 aaKnown RBP0.53□□□□□ -2.32
USP3-209ENST00000558925 TRGV10A0A0A0MS01 117 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 IGKV3D-7A0A0C4DH55 119 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 IGKV3OR2-268A0A0C4DH90 116 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 FUOMA2VDF0 154 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 PGRMC1O00264 195 aaKnown RBP0.53□□□□□ -2.32
USP3-209ENST00000558925 HCRTO43612 131 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 KRTAP10-4P60372 401 aaPredicted RBP0.53□□□□□ -2.32
USP3-209ENST00000558925 UBE2BP63146 152 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 PDE6HQ13956 83 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 POU6F1Q14863 301 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 BCL2L15Q5TBC7 163 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 C1orf134Q5TEV5 83 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 TRIQKQ629K1 86 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 TEX261Q6UWH6 196 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.53□□□□□ -2.32
USP3-209ENST00000558925 PATE2Q6UY27 113 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 STX19Q8N4C7 294 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 OR10K1Q8NGX5 313 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 C10orf105Q8TEF2 133 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 PBDC1Q9BVG4 233 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 NPCDR1Q9BY65 106 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 PCBD2Q9H0N5 130 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 TRABDQ9H4I3 376 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 NHP2Q9NX24 153 aaKnown RBP0.53□□□□□ -2.32
USP3-209ENST00000558925 HS3ST2Q9Y278 367 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 RNF11Q9Y3C5 154 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 U3KQ87 197 aa0.53□□□□□ -2.32
USP3-209ENST00000558925 CACNA1BQ00975 2339 aa0.53□□□□□ -2.33
USP3-209ENST00000558925 AHNAK2Q8IVF2 5795 aa0.53□□□□□ -2.33
USP3-209ENST00000558925 NUP98P52948 1817 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 PLXNA4Q9HCM2 1894 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 MYO18AQ92614 2054 aaKnown RBP0.52□□□□□ -2.33
USP3-209ENST00000558925 FREM3P0C091 2139 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 IGKV2D-26A0A0A0MRZ7 120 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 CCDC160A6NGH7 325 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 F8W036 122 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 AIPO00170 330 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 PROSCO94903 275 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 DHFRP00374 187 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 IGLV1-51P01701 117 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 TRGC2P03986 189 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 CD2P06729 351 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 HLA-EP13747 358 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 OGNP20774 298 aaKnown RBP0.52□□□□□ -2.33
USP3-209ENST00000558925 SERPINB1P30740 379 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 ROMO1P60602 79 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 C1orf137Q5JT78 98 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 EIF5AL1Q6IS14 154 aaKnown RBP0.52□□□□□ -2.33
USP3-209ENST00000558925 GRINAQ7Z429 371 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 STX12Q86Y82 276 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 FAM24BQ8N5W8 94 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 DEFB119Q8N690 84 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 OR4K15Q8NH41 348 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 CANT1Q8WVQ1 401 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 DYDC1Q8WWB3 177 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 TEX37Q96LM6 180 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 YPEL2Q96QA6 119 aa0.52□□□□□ -2.33
USP3-209ENST00000558925 RETNLBQ9BQ08 111 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms