RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 RNF212Q495C1 297 aa12.98□□□□□ -0.33
VIPAS39-209ENST00000556909 SPATA31B1PQ5VZV4 182 aa12.98□□□□□ -0.33
VIPAS39-209ENST00000556909 ZNF575Q86XF7 245 aa12.98□□□□□ -0.33
VIPAS39-209ENST00000556909 SLC35E1Q96K37 410 aa12.98□□□□□ -0.33
VIPAS39-209ENST00000556909 YTHDF2Q9Y5A9 579 aaKnown RBP12.98□□□□□ -0.33
VIPAS39-209ENST00000556909 A0A0B4J2A0 478 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 ISLRO14498 428 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 CTDSP2O14595 271 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 HBE1P02100 147 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 FAM78BQ5VT40 261 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 TMEM88Q6PEY1 159 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 LYZL2Q7Z4W2 148 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 CLVS1Q8IUQ0 354 aaPredicted RBP12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 C7orf50Q9BRJ6 194 aaKnown RBP12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 SHPKQ9UHJ6 478 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 KCNIP3Q9Y2W7 256 aa12.97□□□□□ -0.33
VIPAS39-209ENST00000556909 A0A0J9YX75 114 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 CTDSPLO15194 276 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 FABP1P07148 127 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 ATP5IP56385 69 aaPredicted RBP12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 OR2F1Q13607 317 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 SOHLH1Q5JUK2 328 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 EBLN2Q6P2I7 272 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 PPP1R14BQ96C90 147 aa12.96□□□□□ -0.33
VIPAS39-209ENST00000556909 RRN3P1Q2M238 152 aa12.95□□□□□ -0.34
VIPAS39-209ENST00000556909 SAMD13Q5VXD3 122 aa12.95□□□□□ -0.34
VIPAS39-209ENST00000556909 OR8I2Q8N0Y5 310 aa12.95□□□□□ -0.34
VIPAS39-209ENST00000556909 C20orf173Q96LM9 149 aa12.95□□□□□ -0.34
VIPAS39-209ENST00000556909 TRGV9Q99603 122 aa12.95□□□□□ -0.34
VIPAS39-209ENST00000556909 ANKRD20A5PA0PJZ0 165 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 A8MTW9 85 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 SNRPGP15A8MWD9 76 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 AKR1C4P17516 323 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 DAD1P61803 113 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 IL18Q14116 193 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 C1orf134Q5TEV5 83 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 OR1S1Q8NH92 325 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 RPRMQ9NS64 109 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 DOK5Q9P104 306 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 SCP2D1Q9UJQ7 156 aa12.94□□□□□ -0.34
VIPAS39-209ENST00000556909 LRP1BQ9NZR2 4599 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 IGKV1OR2-108A0A075B7D4 117 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 MEOX2P50222 304 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 SPCS2Q15005 226 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 AMTNQ6UX39 209 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 THAP8Q8NA92 274 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 DIRAS2Q96HU8 199 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 C16orf92Q96LL3 132 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 SCGB3A2Q96PL1 93 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 KRTAP4-5Q9BYR2 181 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 MAGT1Q9H0U3 335 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 SLC25A32Q9H2D1 315 aa12.93□□□□□ -0.34
VIPAS39-209ENST00000556909 ANXA3P12429 323 aa12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 SRPXP78539 464 aa12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 IGF2BP2-AS1Q96M15 143 aa12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 C17orf77Q96MU5 243 aa12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 RABL2AQ9UBK7 228 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 RABL2BQ9UNT1 228 aa12.92□□□□□ -0.34
VIPAS39-209ENST00000556909 PITX3O75364 302 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 IAPPP10997 89 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 GALR1P47211 349 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 RAB11AP62491 216 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 C15orf53Q8NAA6 179 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 TMEM208Q9BTX3 173 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 SLC25A22Q9H936 323 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 MCUBQ9NWR8 336 aa12.91□□□□□ -0.34
VIPAS39-209ENST00000556909 PAIP2BQ9ULR5 123 aaKnown RBP12.9□□□□□ -0.34
VIPAS39-209ENST00000556909 SLC45A2Q9UMX9 530 aa12.9□□□□□ -0.34
VIPAS39-209ENST00000556909 TMED3Q9Y3Q3 217 aa12.9□□□□□ -0.34
VIPAS39-209ENST00000556909 DUXBA0A1W2PPF3 345 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 ZNF98A6NK75 572 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 CFDP00746 253 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 PRM2P04554 102 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 ALDH3B2P48448 385 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 FAM3BP58499 235 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 GPR141Q7Z602 305 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 RSG1Q9BU20 258 aa12.89□□□□□ -0.35
VIPAS39-209ENST00000556909 ZNF705GA8MUZ8 300 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 PRSS46E5RG02 174 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 M0R2Z0 102 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 CRXO43186 299 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 INSP01308 110 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 CNN1P51911 297 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 SPINK13Q1W4C9 94 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 GGNBP1Q5YKI7 109 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 OR11H7Q8NGC8 314 aa12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 CCDC59Q9P031 241 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-209ENST00000556909 PIGBOS1A0A0B4J2F0 54 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 LYRM9A8MSI8 78 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 GATA2P23769 480 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 TNP2Q05952 138 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 OR4D5Q8NGN0 318 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 OR1B1Q8NGR6 318 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 DYNC2LI1Q8TCX1 351 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 ATG101Q9BSB4 218 aa12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 RSL24D1Q9UHA3 163 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-209ENST00000556909 TRAV8-2A0A0B4J237 113 aa12.86□□□□□ -0.35
VIPAS39-209ENST00000556909 ORM2P19652 201 aa12.86□□□□□ -0.35
VIPAS39-209ENST00000556909 IGFL4Q6B9Z1 124 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms