RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KIR2DL5AQ8N109 375 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 KIR2DL5BQ8NHK3 375 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 PPP1R14BQ96C90 147 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 C17orf77Q96MU5 243 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 CSTL1Q9H114 145 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 PLA2G2EQ9NZK7 142 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 DOK5Q9P104 306 aa8.5□□□□□ -1.05
CCDC88C-208ENST00000554165 INMT-MINDY4F8WBC2 141 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 CST7O76096 145 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 FABP1P07148 127 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 GIG44P09565 113 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 S100A10P60903 97 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 SLC38A11Q08AI6 406 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 ACTL10Q5JWF8 245 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 Q6ZWC4 215 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 OR10P1Q8NGE3 313 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 OR1B1Q8NGR6 318 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 RNF183Q96D59 192 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 NRN1Q9NPD7 142 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 CSMD3Q7Z407 3707 aa8.49□□□□□ -1.05
CCDC88C-208ENST00000554165 A0A0J9YWU9 116 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 IGSF23A1L1A6 192 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 L7N2F9 121 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 UBE2CO00762 179 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 GOSR2O14653 212 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 BCAP31P51572 246 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 CAV2P51636 162 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 VAMP2P63027 116 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 TRPT1Q86TN4 253 aaKnown RBP8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 OR8I2Q8N0Y5 310 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 BPIFCQ8NFQ6 507 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 SCRT1Q9BWW7 348 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 SLC25A32Q9H2D1 315 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 SLC25A22Q9H936 323 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 DYNC2H1Q8NCM8 4307 aaKnown RBP8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 STARD9Q9P2P6 4700 aa8.48□□□□□ -1.05
CCDC88C-208ENST00000554165 ZNF98A6NK75 572 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 SOCS3O14543 225 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 CA1P00915 261 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 LINC00869P0C866 280 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 C4BPBP20851 252 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 AP2S1P53680 142 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 C1orf194Q5T5A4 169 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 GDF5OSQ5U4N7 250 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 PATE2Q6UY27 113 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 STHQ8IWL8 128 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 TMEM217Q8N7C4 229 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 UHRF2Q96PU4 802 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 MARVELD1Q9BSK0 173 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 GPN1Q9HCN4 374 aaPredicted RBP8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 TP53TG1Q9Y2A0 90 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 RYR3Q15413 4870 aa8.47□□□□□ -1.05
CCDC88C-208ENST00000554165 H0YIZ8 118 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 DEDDO75618 318 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 OR5G3P0C626 314 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 PRB4P10163 310 aaPredicted RBP8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 IGFL4Q6B9Z1 124 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 C20orf173Q96LM9 149 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 LINC00052Q96N35 136 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 MGST2Q99735 147 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 RSG1Q9BU20 258 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 TMEM147Q9BVK8 224 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 NPVFQ9HCQ7 196 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 CLEC5AQ9NY25 188 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 MGAT4CQ9UBM8 478 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 SLC45A2Q9UMX9 530 aa8.46□□□□□ -1.06
CCDC88C-208ENST00000554165 FNDC10F2Z333 226 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 F6UB75 175 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 H3BRN7 92 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 AGPAT2O15120 278 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 DEFB4AO15263 64 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 HYPMO75409 117 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 IGKV3-20P01619 116 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 NUP62P37198 522 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 H2BFSP57053 126 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 DEFA1P59665 94 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 DEFA3P59666 94 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 SNRPD3P62318 126 aaKnown RBP8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 LRRC37A5PQ49AS3 106 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 TEPPQ6URK8 271 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 TMEM252Q8N6L7 170 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 SHANK2-AS3Q9BTD1 123 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 SLC25A39Q9BZJ4 359 aaPredicted RBP8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 ARL6Q9H0F7 186 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 OR5AC2Q9NZP5 309 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 FBXL17Q9UF56 701 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 PFDN2Q9UHV9 154 aa8.45□□□□□ -1.06
CCDC88C-208ENST00000554165 H3BMM0 161 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 PRAF2O60831 178 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 CFDP00746 253 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 SNRPCP09234 159 aaKnown RBP8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 PLP1P60201 277 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 MORN5Q5VZ52 161 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 OR11H2Q8NH07 326 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 IL17DQ8TAD2 202 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 RARRES2Q99969 163 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 GGACTQ9BVM4 153 aa8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 LYRM2Q9NU23 88 aaPredicted RBP8.44□□□□□ -1.06
CCDC88C-208ENST00000554165 HIGD1AQ9Y241 93 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms