RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 RAB32Q13637 225 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 CYP2G1PQ6ZSU1 146 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 LILRB2Q8N423 598 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 UBQLN2Q9UHD9 624 aa10.7□□□□□ -0.7
CCDC88C-207ENST00000554051 RBMY1BA6NDE4 496 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 RBMY1EA6NEQ0 496 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 E5RGE8 158 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 K7EQG2 157 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 RBMY1DP0C7P1 496 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 S100A11P31949 105 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 MEOX2P50222 304 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 PLP1P60201 277 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 RAP2BP61225 183 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 RRAS2P62070 204 aaPredicted RBP10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 OR2F1Q13607 317 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 GBGT1Q8N5D6 347 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 STPG3Q8N7X2 389 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 SLC25A31Q9H0C2 315 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 C11orf1Q9H5F2 150 aa10.69□□□□□ -0.7
CCDC88C-207ENST00000554051 LINC00869P0C866 280 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 GALR1P47211 349 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 BAXQ07812 192 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 ATP6V1FQ16864 119 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 OR8I2Q8N0Y5 310 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 DCANP1Q8TF63 244 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 UQCC1Q9NVA1 299 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 TP53TG1Q9Y2A0 90 aa10.68□□□□□ -0.7
CCDC88C-207ENST00000554051 MPDU1O75352 247 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 HYPMO75409 117 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 CCNKO75909 580 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 VWC2Q2TAL6 325 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 TMEM41BQ5BJD5 291 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 Q6ZWC4 215 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 TMEM252Q8N6L7 170 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 OR1B1Q8NGR6 318 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 ASB13Q8WXK3 278 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 KCNIP2Q9NS61 270 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 HIGD1AQ9Y241 93 aa10.67□□□□□ -0.7
CCDC88C-207ENST00000554051 RPL7P18124 248 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 ORM2P19652 201 aa10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 ID1P41134 155 aa10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 PSMB3P49720 205 aa10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 RGS21Q2M5E4 152 aa10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 WFDC3Q8IUB2 231 aa10.66□□□□□ -0.7
CCDC88C-207ENST00000554051 ELOA3CA0A087WX78 387 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 FAM24AA6NFZ4 105 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 CST7O76096 145 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 H2BFSP57053 126 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 DEFB131AP59861 70 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 LRRC37A5PQ49AS3 106 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 STHQ8IWL8 128 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 TMEM217Q8N7C4 229 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 CITED4Q96RK1 184 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 SHANK2-AS3Q9BTD1 123 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 WDR83OSQ9Y284 106 aa10.65□□□□□ -0.7
CCDC88C-207ENST00000554051 IGSF23A1L1A6 192 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 ZNF98A6NK75 572 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 H3BRN7 92 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 ISLRO14498 428 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 AGPAT2O15120 278 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 SIX6O95475 246 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 ZNF688P0C7X2 276 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 SPP1P10451 314 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 CAMLGP49069 296 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 ARL16Q0P5N6 197 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 MORN3Q6PF18 240 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 APRG1Q8IVJ8 170 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 CHAC2Q8WUX2 184 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 PPP1R1CQ8WVI7 109 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 PFDN5Q99471 154 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 ALG5Q9Y673 324 aa10.64□□□□□ -0.71
CCDC88C-207ENST00000554051 UBE2L5PA0A1B0GUS4 154 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 OR5G3P0C626 314 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 EWSR1Q01844 656 aaKnown RBP eCLIP10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 PSMG4Q5JS54 123 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 SPATA31B1PQ5VZV4 182 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 Q6ZRG5 221 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 OR1L4Q8NGR5 311 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 GATAD1Q8WUU5 269 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 MGST2Q99735 147 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 SLC25A39Q9BZJ4 359 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 SLC25A22Q9H936 323 aa10.63□□□□□ -0.71
CCDC88C-207ENST00000554051 COX7A2P2O60397 106 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 MPC2O95563 127 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 ATF4P18848 351 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 GATA2P23769 480 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 LEMD1Q68G75 181 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 IL17DQ8TAD2 202 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 ARL6Q9H0F7 186 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 CSTL1Q9H114 145 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 MED28Q9H204 178 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 ARV1Q9H2C2 271 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 SLC25A32Q9H2D1 315 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 DOK5Q9P104 306 aa10.62□□□□□ -0.71
CCDC88C-207ENST00000554051 C3orf84H3BNL1 204 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 RPL35AP18077 110 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 CXCL2P19875 107 aa10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 RPL29P47914 159 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 NUTF2P61970 127 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-207ENST00000554051 FGL1Q08830 312 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms