RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SIGLEC8Q9NYZ4 499 aa8.81□□□□□ -1
YBX3-213ENST00000542641 RABAC1Q9UI14 185 aa8.81□□□□□ -1
YBX3-213ENST00000542641 IGHV3OR16-13A0A075B7E8 117 aa8.8□□□□□ -1
YBX3-213ENST00000542641 IGHV3-74A0A0B4J1X5 117 aa8.8□□□□□ -1
YBX3-213ENST00000542641 KANTRA0A1W2PQU2 76 aa8.8□□□□□ -1
YBX3-213ENST00000542641 HYPMO75409 117 aa8.8□□□□□ -1
YBX3-213ENST00000542641 JTBO76095 146 aa8.8□□□□□ -1
YBX3-213ENST00000542641 HNRNPCP07910 306 aaKnown RBP eCLIP8.8□□□□□ -14e-7■□□□□ 9.3
YBX3-213ENST00000542641 C8orf88P0DMB2 117 aa8.8□□□□□ -1
YBX3-213ENST00000542641 CRYBB3P26998 211 aa8.8□□□□□ -1
YBX3-213ENST00000542641 INSL3P51460 131 aa8.8□□□□□ -1
YBX3-213ENST00000542641 B2MP61769 119 aa8.8□□□□□ -1
YBX3-213ENST00000542641 PXDC1Q5TGL8 231 aa8.8□□□□□ -1
YBX3-213ENST00000542641 ADAMTSL5Q6ZMM2 481 aa8.8□□□□□ -1
YBX3-213ENST00000542641 TMUB2Q71RG4 321 aa8.8□□□□□ -1
YBX3-213ENST00000542641 HSD17B11Q8NBQ5 300 aa8.8□□□□□ -1
YBX3-213ENST00000542641 DYNLRB2Q8TF09 96 aa8.8□□□□□ -1
YBX3-213ENST00000542641 RSG1Q9BU20 258 aa8.8□□□□□ -1
YBX3-213ENST00000542641 KCNIP2Q9NS61 270 aa8.8□□□□□ -1
YBX3-213ENST00000542641 SLC39A9Q9NUM3 307 aa8.8□□□□□ -1
YBX3-213ENST00000542641 DOK5Q9P104 306 aa8.8□□□□□ -1
YBX3-213ENST00000542641 SMPXQ9UHP9 88 aa8.8□□□□□ -1
YBX3-213ENST00000542641 PFDN2Q9UHV9 154 aa8.8□□□□□ -1
YBX3-213ENST00000542641 PXMP4Q9Y6I8 212 aa8.8□□□□□ -1
YBX3-213ENST00000542641 CMYA5Q8N3K9 4069 aa8.8□□□□□ -1
YBX3-213ENST00000542641 IGHV3-66A0A0C4DH42 116 aa8.79□□□□□ -1
YBX3-213ENST00000542641 A0A1W2PS18 150 aa8.79□□□□□ -1
YBX3-213ENST00000542641 BCL2L11O43521 198 aa8.79□□□□□ -1
YBX3-213ENST00000542641 APOHP02749 345 aaPredicted RBP8.79□□□□□ -1
YBX3-213ENST00000542641 OR5G3P0C626 314 aa8.79□□□□□ -1
YBX3-213ENST00000542641 BMI1P35226 326 aa8.79□□□□□ -1
YBX3-213ENST00000542641 PLP1P60201 277 aa8.79□□□□□ -1
YBX3-213ENST00000542641 PPP1R14BQ96C90 147 aa8.79□□□□□ -1
YBX3-213ENST00000542641 RHPN1-AS1Q9BWJ2 59 aa8.79□□□□□ -1
YBX3-213ENST00000542641 GPR61Q9BZJ8 451 aa8.79□□□□□ -1
YBX3-213ENST00000542641 TMEM231Q9H6L2 316 aa8.79□□□□□ -1
YBX3-213ENST00000542641 CYTL1Q9NRR1 136 aa8.79□□□□□ -1
YBX3-213ENST00000542641 HIGD1AQ9Y241 93 aa8.79□□□□□ -1
YBX3-213ENST00000542641 ELOA3CA0A087WX78 387 aaPredicted RBP8.78□□□□□ -1
YBX3-213ENST00000542641 CHEK1O14757 476 aa8.78□□□□□ -1
YBX3-213ENST00000542641 COX7A2P2O60397 106 aa8.78□□□□□ -1
YBX3-213ENST00000542641 ATP6V0CP27449 155 aa8.78□□□□□ -1
YBX3-213ENST00000542641 S100A7P31151 101 aa8.78□□□□□ -1
YBX3-213ENST00000542641 NKX2-5P52952 324 aaPredicted RBP8.78□□□□□ -1
YBX3-213ENST00000542641 S100A7AQ86SG5 101 aa8.78□□□□□ -1
YBX3-213ENST00000542641 C9orf62Q8N4C0 152 aa8.78□□□□□ -1
YBX3-213ENST00000542641 OR1L4Q8NGR5 311 aa8.78□□□□□ -1
YBX3-213ENST00000542641 ST8SIA2Q92186 375 aa8.78□□□□□ -1
YBX3-213ENST00000542641 GRAMD2BQ96HH9 432 aa8.78□□□□□ -1
YBX3-213ENST00000542641 ZNF471Q9BX82 626 aaPredicted RBP8.78□□□□□ -1
YBX3-213ENST00000542641 ARV1Q9H2C2 271 aa8.78□□□□□ -1
YBX3-213ENST00000542641 DNAJC4Q9NNZ3 241 aa8.78□□□□□ -1
YBX3-213ENST00000542641 TECRQ9NZ01 308 aaKnown RBP8.78□□□□□ -1
YBX3-213ENST00000542641 MLXQ9UH92 298 aa8.78□□□□□ -1
YBX3-213ENST00000542641 TIMM9Q9Y5J7 89 aa8.78□□□□□ -1
YBX3-213ENST00000542641 SELENOKQ9Y6D0 94 aa8.78□□□□□ -1
YBX3-213ENST00000542641 U3KQE9 123 aa8.78□□□□□ -1
YBX3-213ENST00000542641 BUB3O43684 328 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 IGLV1-51P01701 117 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 DEFB114Q30KQ6 69 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 FFAR4Q5NUL3 377 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 C10orf113Q5VZT2 155 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 LAMTOR1Q6IAA8 161 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 PATE2Q6UY27 113 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 LINC00305Q7Z4B0 112 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 TMEM37Q8WXS4 190 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 GNPNAT1Q96EK6 184 aaPredicted RBP8.77□□□□□ -1.01
YBX3-213ENST00000542641 UHRF2Q96PU4 802 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 PFDN5Q99471 154 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 RNF2Q99496 336 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 PSMG3Q9BT73 122 aaPredicted RBP8.77□□□□□ -1.01
YBX3-213ENST00000542641 SLC25A39Q9BZJ4 359 aaPredicted RBP8.77□□□□□ -1.01
YBX3-213ENST00000542641 VSIRQ9H7M9 311 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 RFNGQ9Y644 331 aa8.77□□□□□ -1.01
YBX3-213ENST00000542641 PKD1L1Q8TDX9 2849 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 ZNF98A6NK75 572 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 C4BPBP20851 252 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 RPL11P62913 178 aaKnown RBP8.76□□□□□ -1.01
YBX3-213ENST00000542641 EIF5AP63241 154 aaKnown RBP8.76□□□□□ -1.01
YBX3-213ENST00000542641 CD300EQ496F6 205 aaPredicted RBP8.76□□□□□ -1.01
YBX3-213ENST00000542641 GCSAMLQ5JQS6 135 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 C16orf54Q6UWD8 224 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 RBPMS2Q6ZRY4 209 aaKnown RBP8.76□□□□□ -1.01
YBX3-213ENST00000542641 GATAD1Q8WUU5 269 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 SHANK2-AS3Q9BTD1 123 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 SH3BGRL3Q9H299 93 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 SLC25A22Q9H936 323 aa8.76□□□□□ -1.01
YBX3-213ENST00000542641 G3V4G9 280 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 H3BRN7 92 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 CD5P06127 495 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 TPT1P13693 172 aaKnown RBP8.75□□□□□ -1.01
YBX3-213ENST00000542641 SERF2P84101 59 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 ACOT6Q3I5F7 207 aaPredicted RBP8.75□□□□□ -1.01
YBX3-213ENST00000542641 C1orf194Q5T5A4 169 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 FAM78BQ5VT40 261 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 LEMD1Q68G75 181 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 TCF24Q7RTU0 167 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 OR8I2Q8N0Y5 310 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 OR2K2Q8NGT1 345 aa8.75□□□□□ -1.01
YBX3-213ENST00000542641 OR2G3Q8NGZ4 309 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms