RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TRAV2A0A0B4J234 112 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 TSPAN4O14817 238 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 JTBO76095 146 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 C4BPBP20851 252 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 EIF5AP63241 154 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 OPCMLQ14982 345 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 STPG3Q8N7X2 389 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 ST6GAL2Q96JF0 529 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 HYLS1Q96M11 299 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 RNF2Q99496 336 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 MGST2Q99735 147 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 GGTLC1Q9BX51 225 aa13.26□□□□□ -0.29
CLSTN3-210ENST00000540931 NOTCH3Q9UM47 2321 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 G3V4G9 280 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 ARPC5O15511 151 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 BUB3O43684 328 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 ORM2P19652 201 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 B2MP61769 119 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 USF2Q15853 346 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 BEAN1Q3B7T3 259 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 CD300EQ496F6 205 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 Q5BKY6 102 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 GTSCR1Q86UQ5 136 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 OR1B1Q8NGR6 318 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 GATAD1Q8WUU5 269 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 GNPNAT1Q96EK6 184 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 DNAJC4Q9NNZ3 241 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 TIMM9Q9Y5J7 89 aa13.25□□□□□ -0.29
CLSTN3-210ENST00000540931 OR4C46A6NHA9 309 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 ZNF207O43670 478 aaKnown RBP13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 COX7A2P2O60397 106 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 C1QBP02746 253 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 OR5G3P0C626 314 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 MEOX2P50222 304 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 PRR20EP86478 221 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 PRR20CP86479 221 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 PRR20DP86480 221 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 PRR20BP86481 221 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 PRR20AP86496 221 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 ADAMTSL5Q6ZMM2 481 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 ZNF414Q96IQ9 312 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 ARL6Q9H0F7 186 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 SLC39A9Q9NUM3 307 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 MLXQ9UH92 298 aa13.24□□□□□ -0.29
CLSTN3-210ENST00000540931 hCG_2014768A0A024R1R8 64 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 IGHV3OR16-8A0A075B7F1 116 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 RNF222A6NCQ9 220 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 G3V3Q6 166 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 SERF2P84101 59 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 C10orf113Q5VZT2 155 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 C16orf54Q6UWD8 224 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 SMIM3Q9BZL3 60 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 SEPSECSQ9HD40 501 aaKnown RBP13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 PXMP4Q9Y6I8 212 aa13.23□□□□□ -0.29
CLSTN3-210ENST00000540931 KANTRA0A1W2PQU2 76 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 MBP02144 154 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 GP9P14770 177 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 RPL7P18124 248 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 GALR1P47211 349 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 TCF24Q7RTU0 167 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 OR8I2Q8N0Y5 310 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 KCNRGQ8N5I3 272 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 ST8SIA2Q92186 375 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 ARPC5LQ9BPX5 153 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 FAM110AQ9BQ89 295 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 PSMG3Q9BT73 122 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 ARV1Q9H2C2 271 aa13.22□□□□□ -0.29
CLSTN3-210ENST00000540931 ZNF98A6NK75 572 aa13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 DNASE2O00115 360 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 RPL11P62913 178 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 GUCA2BQ16661 112 aa13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 SIGLEC15Q6ZMC9 328 aa13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 TMEM61Q8N0U2 210 aa13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 SHANK2-AS3Q9BTD1 123 aa13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 SLC25A39Q9BZJ4 359 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-210ENST00000540931 GATA2P23769 480 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 MIC13Q5XKP0 118 aa13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 FAM90A2PQ658T7 463 aa13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 STXBP6Q8NFX7 210 aa13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 GLMPQ8WWB7 406 aa13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 MRPL32Q9BYC8 188 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-210ENST00000540931 H3BRN7 92 aa13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 PFDN1O60925 122 aa13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 ACOT6Q3I5F7 207 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 TMEM182Q6ZP80 229 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 LINC00305Q7Z4B0 112 aa13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 BPIFA4PQ86YQ2 179 aa13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 OR2G3Q8NGZ4 309 aa13.19□□□□□ -0.3
CLSTN3-210ENST00000540931 SMLR1H3BR10 107 aa13.18□□□□□ -0.3
CLSTN3-210ENST00000540931 APOHP02749 345 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-210ENST00000540931 ZFP69Q49AA0 526 aa13.18□□□□□ -0.3
CLSTN3-210ENST00000540931 NRN1Q9NPD7 142 aa13.18□□□□□ -0.3
CLSTN3-210ENST00000540931 SORL1Q92673 2214 aa13.18□□□□□ -0.3
CLSTN3-210ENST00000540931 IGHV3OR16-13A0A075B7E8 117 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 IGHV3-49A0A0A0MS15 119 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 IGHV3-74A0A0B4J1X5 117 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 ZNF785A8K8V0 405 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 BCL2L11O43521 198 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 ID1P41134 155 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 TAS2R45P59539 299 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms