RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TM4SF20Q53R12 229 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 FFAR4Q5NUL3 377 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 IL34Q6ZMJ4 242 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 ADAMTSL5Q6ZMM2 481 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 BAP18Q8IXM2 172 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 TMEM37Q8WXS4 190 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 PBDC1Q9BVG4 233 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 KCNIP2Q9NS61 270 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 UFC1Q9Y3C8 167 aa11.62□□□□□ -0.55
LSM1-203ENST00000520755 C2orf70A6NJV1 201 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 APOHP02749 345 aaPredicted RBP11.61□□□□□ -0.55
LSM1-203ENST00000520755 MORN5Q5VZ52 161 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 ZNF709Q8N972 641 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 OR1B1Q8NGR6 318 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 GNPNAT1Q96EK6 184 aaPredicted RBP11.61□□□□□ -0.55
LSM1-203ENST00000520755 UHRF2Q96PU4 802 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 DAZ1Q9NQZ3 744 aaKnown RBP11.61□□□□□ -0.55
LSM1-203ENST00000520755 MRPL27Q9P0M9 148 aaKnown RBP11.61□□□□□ -0.55
LSM1-203ENST00000520755 U3KQE9 123 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 NOTCH3Q9UM47 2321 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 MGAM2Q2M2H8 2515 aa11.61□□□□□ -0.55
LSM1-203ENST00000520755 IGHV3-49A0A0A0MS15 119 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 K7EMT4 169 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 CFDP00746 253 aaPredicted RBP11.6□□□□□ -0.55
LSM1-203ENST00000520755 FOLR2P14207 255 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 ORM2P19652 201 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 CRYBB3P26998 211 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 INSL3P51460 131 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 RAB2AP61019 212 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 BEAN1Q3B7T3 259 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 TMED6Q8WW62 240 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 SELENOKQ9Y6D0 94 aa11.6□□□□□ -0.55
LSM1-203ENST00000520755 IGHV3OR16-13A0A075B7E8 117 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 IGHV3-74A0A0B4J1X5 117 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 H3BRN7 92 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 HYPMO75409 117 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 OR5G3P0C626 314 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 SEC11BP0C7V7 166 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 C4BPBP20851 252 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 CBLN1P23435 193 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 PXDC1Q5TGL8 231 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 SPATA31B1PQ5VZV4 182 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 DYNLRB2Q8TF09 96 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 SCRT1Q9BWW7 348 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 RABAC1Q9UI14 185 aa11.59□□□□□ -0.55
LSM1-203ENST00000520755 IGHV7-4-1A0A0J9YVY3 117 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 WIPF1O43516 503 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 COX7A2P2O60397 106 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 C8orf88P0DMB2 117 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 EIF5AP63241 154 aaKnown RBP11.58□□□□□ -0.56
LSM1-203ENST00000520755 SERF2P84101 59 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 Q6ZRG5 221 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 METTL26Q96S19 204 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 SLC25A39Q9BZJ4 359 aaPredicted RBP11.58□□□□□ -0.56
LSM1-203ENST00000520755 SIGLEC8Q9NYZ4 499 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 HIGD1AQ9Y241 93 aa11.58□□□□□ -0.56
LSM1-203ENST00000520755 IGHV3-66A0A0C4DH42 116 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 EIF3GO75821 320 aaKnown RBP eCLIP11.57□□□□□ -0.56
LSM1-203ENST00000520755 IGLV1-51P01701 117 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 M6PRP20645 277 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 KRTAP10-11P60412 298 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 KPRPQ5T749 579 aaPredicted RBP11.57□□□□□ -0.56
LSM1-203ENST00000520755 C10orf113Q5VZT2 155 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 LEMD1Q68G75 181 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 SSX7Q7RTT5 188 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 OR1L4Q8NGR5 311 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 GATAD1Q8WUU5 269 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 MARC2Q969Z3 335 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 SHANK2-AS3Q9BTD1 123 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 SEPSECSQ9HD40 501 aaKnown RBP11.57□□□□□ -0.56
LSM1-203ENST00000520755 RPRMQ9NS64 109 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 MLXQ9UH92 298 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 SMPXQ9UHP9 88 aa11.57□□□□□ -0.56
LSM1-203ENST00000520755 ELOA3CA0A087WX78 387 aaPredicted RBP11.56□□□□□ -0.56
LSM1-203ENST00000520755 CHEK1O14757 476 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 BUB3O43684 328 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 NPPCP23582 126 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 EGFEM1PQ0D2K5 195 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 ZNF726P1Q15940 193 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 ACOT6Q3I5F7 207 aaPredicted RBP11.56□□□□□ -0.56
LSM1-203ENST00000520755 TMEM41BQ5BJD5 291 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 FAM74A1Q5RGS3 127 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 ALKAL2Q6UX46 152 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 MIR17HGQ75NE6 70 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 LINC00305Q7Z4B0 112 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 RPP25LQ8N5L8 163 aaKnown RBP11.56□□□□□ -0.56
LSM1-203ENST00000520755 PFDN5Q99471 154 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 DNAJC4Q9NNZ3 241 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 NBEAL1Q6ZS30 2694 aa11.56□□□□□ -0.56
LSM1-203ENST00000520755 TRAV5A0A0B4J249 113 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 ZNF98A6NK75 572 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 PRB2P02812 416 aaPredicted RBP11.55□□□□□ -0.56
LSM1-203ENST00000520755 FHITP49789 147 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 DEFB114Q30KQ6 69 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 CD300EQ496F6 205 aaPredicted RBP11.55□□□□□ -0.56
LSM1-203ENST00000520755 FAM78BQ5VT40 261 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 FAM122CQ6P4D5 195 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 OR10G4Q8NGN3 311 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 OR10G9Q8NGN4 311 aa11.55□□□□□ -0.56
LSM1-203ENST00000520755 OR10G7Q8NGN6 311 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms