RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 NCALDP61601 193 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 TMED2Q15363 201 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 HACD4Q5VWC8 232 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 PXT1Q8NFP0 134 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 OR2T35Q8NGX2 323 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 OR10K1Q8NGX5 313 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 PATE1Q8WXA2 126 aa0.73□□□□□ -2.29
LSM6-205ENST00000507449 MIA2Q96PC5 1412 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 AHNAK2Q8IVF2 5795 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 CAMSAP1Q5T5Y3 1602 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 TCRBV4S1A1TA0A5B7 111 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 CCL25O15444 150 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 CCL16O15467 120 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 CST8O60676 142 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 ARF6P62330 175 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 MPV17LQ2QL34 196 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 YPEL2Q96QA6 119 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 GPER1Q99527 375 aa0.72□□□□□ -2.29
LSM6-205ENST00000507449 SLC25A21Q9BQT8 299 aaPredicted RBP0.72□□□□□ -2.29
LSM6-205ENST00000507449 KIF1BO60333 1816 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 EML6Q6ZMW3 1958 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 A8MWV9 139 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 UBE2BP63146 152 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 GNG5P63218 68 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 PATE2Q6UY27 113 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 TMEM254Q8TBM7 123 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 CANT1Q8WVQ1 401 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 C4orf3Q8WVX3 66 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 CEP19Q96LK0 163 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 TAS2R7Q9NYW3 318 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 PRNDQ9UKY0 176 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 PYCARDQ9ULZ3 195 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 CEP192Q8TEP8 1941 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 ZNF469Q96JG9 3925 aaPredicted RBP0.71□□□□□ -2.3
LSM6-205ENST00000507449 TAF1LQ8IZX4 1826 aa0.71□□□□□ -2.3
LSM6-205ENST00000507449 IGLV1-51P01701 117 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 INSL3P51460 131 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 DYNLT3P51808 116 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 BCL2L15Q5TBC7 163 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 KRTAP26-1Q6PEX3 210 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 TEX37Q96LM6 180 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 LINC00467Q9BRT7 94 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 PCTPQ9UKL6 214 aa0.7□□□□□ -2.3
LSM6-205ENST00000507449 ARHGEF11O15085 1522 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 TRBV6-4A0A1B0GX49 114 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 GGCTO75223 188 aaKnown RBP0.69□□□□□ -2.3
LSM6-205ENST00000507449 BANF1O75531 89 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 CRHP06850 196 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 NFYBP25208 207 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 DSCR4P56555 118 aaPredicted RBP0.69□□□□□ -2.3
LSM6-205ENST00000507449 C1orf134Q5TEV5 83 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 ZNF833PQ6ZTB9 187 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 ST6GALNAC3Q8NDV1 305 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 CDC26Q8NHZ8 85 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 NPCDR1Q9BY65 106 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 PSTPIP2Q9H939 334 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 SS18L2Q9UHA2 77 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 DENND4CQ5VZ89 1909 aa0.69□□□□□ -2.3
LSM6-205ENST00000507449 COL1A1P02452 1464 aaPredicted RBP0.68□□□□□ -2.3
LSM6-205ENST00000507449 TLCD2A6NGC4 264 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 E7EUB6 86 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 OBSL1O75147 1896 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 NDUFC2O95298 119 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 DNAL4O96015 105 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 HLA-EP13747 358 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 Q8TAT8 98 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 BORCS5Q969J3 196 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 LINC00052Q96N35 136 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 PAIP2Q9BPZ3 127 aaKnown RBP0.68□□□□□ -2.3
LSM6-205ENST00000507449 ASB4Q9Y574 426 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 LY96Q9Y6Y9 160 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 MCM3APO60318 1980 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 FBN2P35556 2912 aa0.68□□□□□ -2.3
LSM6-205ENST00000507449 TRAV10A0A0B4J240 114 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 IGHV1-58A0A0C4DH39 117 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 DUXBA0A1W2PPF3 345 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 G3V2T6 193 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 NUPR1O60356 82 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 KLF7O75840 302 aaPredicted RBP0.67□□□□□ -2.3
LSM6-205ENST00000507449 ATG12O94817 140 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 CD2P06729 351 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 CXCL1P09341 107 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 BASP1P80723 227 aaKnown RBP0.67□□□□□ -2.3
LSM6-205ENST00000507449 FAM74A1Q5RGS3 127 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 EIF5AL1Q6IS14 154 aaKnown RBP0.67□□□□□ -2.3
LSM6-205ENST00000507449 KRTAP5-10Q6L8G5 202 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 Q8N6K4 173 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 OR5D14Q8NGL3 314 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 POP5Q969H6 163 aaKnown RBP0.67□□□□□ -2.3
LSM6-205ENST00000507449 TP53RKQ96S44 253 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 AMELYQ99218 206 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 POPDC3Q9HBV1 291 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 LAMB4A4D0S4 1761 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 CEP164Q9UPV0 1460 aa0.67□□□□□ -2.3
LSM6-205ENST00000507449 SCN8AQ9UQD0 1980 aa0.66□□□□□ -2.3
LSM6-205ENST00000507449 MYH7BA7E2Y1 1941 aa0.66□□□□□ -2.3
LSM6-205ENST00000507449 TNS3Q68CZ2 1445 aa0.66□□□□□ -2.3
LSM6-205ENST00000507449 A0A087WSZ3 146 aa0.66□□□□□ -2.3
LSM6-205ENST00000507449 H7C1C5 153 aa0.66□□□□□ -2.3
LSM6-205ENST00000507449 PIAS1O75925 651 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms