RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LINC00869P0C866 280 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 GATA2P23769 480 aaPredicted RBP7.82□□□□□ -1.16
SKA1-204ENST00000488454 PXDC1Q5TGL8 231 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 LAMTOR1Q6IAA8 161 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 IL34Q6ZMJ4 242 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 OR11H4Q8NGC9 324 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 OR1B1Q8NGR6 318 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 RNF141Q8WVD5 230 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 GRAMD2BQ96HH9 432 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 HYLS1Q96M11 299 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 MGST2Q99735 147 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 WDR61Q9GZS3 305 aaKnown RBP7.82□□□□□ -1.16
SKA1-204ENST00000488454 KCNIP2Q9NS61 270 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 SMPXQ9UHP9 88 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 SLC45A2Q9UMX9 530 aa7.82□□□□□ -1.16
SKA1-204ENST00000488454 IGHV3-49A0A0A0MS15 119 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 RNF222A6NCQ9 220 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 PFDN1O60925 122 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 C1QBP02746 253 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 OR5G3P0C626 314 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 C8orf88P0DMB2 117 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 CRYBB3P26998 211 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 RPL29P47914 159 aaKnown RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 EIF2B2P49770 351 aaKnown RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 B2MP61769 119 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 USF2Q15853 346 aaPredicted RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 ZFP69Q49AA0 526 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 TMEM182Q6ZP80 229 aaPredicted RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 RBPMS2Q6ZRY4 209 aaKnown RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 NEURL2Q9BR09 285 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 RHPN1-AS1Q9BWJ2 59 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 GGTLC1Q9BX51 225 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 NPCDR1Q9BY65 106 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 PARD6GQ9BYG4 376 aaPredicted RBP7.81□□□□□ -1.16
SKA1-204ENST00000488454 ARL6Q9H0F7 186 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 WFDC1Q9HC57 220 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 RNF24Q9Y225 148 aa7.81□□□□□ -1.16
SKA1-204ENST00000488454 IGHV3OR16-13A0A075B7E8 117 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 IGHV3-74A0A0B4J1X5 117 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 IGHV3-66A0A0C4DH42 116 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 KANTRA0A1W2PQU2 76 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 CHEK1O14757 476 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 RGS13O14921 159 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 COX7A2P2O60397 106 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 JTBO76095 146 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 CD5P06127 495 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 RPL11P62913 178 aaKnown RBP7.8□□□□□ -1.16
SKA1-204ENST00000488454 ZNF345Q14585 488 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 OPCMLQ14982 345 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 DEFB114Q30KQ6 69 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 MIC13Q5XKP0 118 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 LCN12Q6JVE5 192 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 KCNRGQ8N5I3 272 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 STPG3Q8N7X2 389 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 OR1L4Q8NGR5 311 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 OR2K2Q8NGT1 345 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 ZNF414Q96IQ9 312 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 ARPC5LQ9BPX5 153 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 DNAJC4Q9NNZ3 241 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 SLC39A9Q9NUM3 307 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 DOK5Q9P104 306 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 HIGD1AQ9Y241 93 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 PXMP4Q9Y6I8 212 aa7.8□□□□□ -1.16
SKA1-204ENST00000488454 TRRAPQ9Y4A5 3859 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 G3V4G9 280 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 IGLV1-51P01701 117 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 APOHP02749 345 aaPredicted RBP7.79□□□□□ -1.16
SKA1-204ENST00000488454 EDN2P20800 178 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 PLP1P60201 277 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 PAFAH1B2P68402 229 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 CD300EQ496F6 205 aaPredicted RBP7.79□□□□□ -1.16
SKA1-204ENST00000488454 ADAMTSL5Q6ZMM2 481 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 ST8SIA2Q92186 375 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 GNPNAT1Q96EK6 184 aaPredicted RBP7.79□□□□□ -1.16
SKA1-204ENST00000488454 PFDN5Q99471 154 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 MLXQ9UH92 298 aa7.79□□□□□ -1.16
SKA1-204ENST00000488454 TRAV25A0A0B4J276 109 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 KRTAP9-6A0A140TA67 174 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 HELTA6NFD8 242 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 BUB3O43684 328 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 CXCL2P19875 107 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 C4BPBP20851 252 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 EIF5AP63241 154 aaKnown RBP7.78□□□□□ -1.16
SKA1-204ENST00000488454 GUCA2BQ16661 112 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 FFAR4Q5NUL3 377 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 C1orf194Q5T5A4 169 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 C10orf113Q5VZT2 155 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 RPL7L1Q6DKI1 246 aaKnown RBP7.78□□□□□ -1.16
SKA1-204ENST00000488454 TMUB2Q71RG4 321 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 TCF24Q7RTU0 167 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 OR8I2Q8N0Y5 310 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 HSD17B11Q8NBQ5 300 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 RNF2Q99496 336 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 RSG1Q9BU20 258 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 ARV1Q9H2C2 271 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 VSIRQ9H7M9 311 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 TIMM9Q9Y5J7 89 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 SELENOKQ9Y6D0 94 aa7.78□□□□□ -1.16
SKA1-204ENST00000488454 IGKV3-7A0A075B6H7 116 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms