RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FNDC10F2Z333 226 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 DEDDO75618 318 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 CFDP00746 253 aaPredicted RBP10.95□□□□□ -0.66
USP4-212ENST00000486549 RLN2P04090 185 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 RPL35AP18077 110 aaKnown RBP10.95□□□□□ -0.66
USP4-212ENST00000486549 SULT1A1P50225 295 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 CMC4P56277 68 aaPredicted RBP10.95□□□□□ -0.66
USP4-212ENST00000486549 DEFB131AP59861 70 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 CYCSP99999 105 aaKnown RBP10.95□□□□□ -0.66
USP4-212ENST00000486549 TEPPQ6URK8 271 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 STX12Q86Y82 276 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 TMEM252Q8N6L7 170 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 STPG3Q8N7X2 389 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 FAM110AQ9BQ89 295 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 GGACTQ9BVM4 153 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 OR5AC2Q9NZP5 309 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 STAB2Q8WWQ8 2551 aa10.95□□□□□ -0.66
USP4-212ENST00000486549 K7EQG2 157 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 ZNF688P0C7X2 276 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 LINC00869P0C866 280 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 AP2S1P53680 142 aaPredicted RBP10.94□□□□□ -0.66
USP4-212ENST00000486549 LEMD1Q68G75 181 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 DCANP1Q8TF63 244 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 TMEM147Q9BVK8 224 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 SLC25A22Q9H936 323 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 NBEAL2Q6ZNJ1 2754 aa10.94□□□□□ -0.66
USP4-212ENST00000486549 UBE2L5PA0A1B0GUS4 154 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 E5RGE8 158 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 SELENOTP62341 195 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 OR8I2Q8N0Y5 310 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 PPP1R1CQ8WVI7 109 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 NRN1Q9NPD7 142 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 UQCC1Q9NVA1 299 aa10.93□□□□□ -0.66
USP4-212ENST00000486549 H0YIZ8 118 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 AGPAT2O15120 278 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 OR5G3P0C626 314 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 S100A11P31949 105 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 RAP2BP61225 183 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 HBG1P69891 147 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 HBG2P69892 147 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 RGS21Q2M5E4 152 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 ZNF546Q86UE3 836 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 MGST2Q99735 147 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 ARL6Q9H0F7 186 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 FBXL17Q9UF56 701 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 HIGD1AQ9Y241 93 aa10.92□□□□□ -0.66
USP4-212ENST00000486549 ZNF98A6NK75 572 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 HYPMO75409 117 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 APOC4P55056 127 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 EWSR1Q01844 656 aaKnown RBP eCLIP10.91□□□□□ -0.66
USP4-212ENST00000486549 NHLH2Q02577 135 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 BAXQ07812 192 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 PSMG4Q5JS54 123 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 C1orf194Q5T5A4 169 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 SCRT1Q9BWW7 348 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 SLC25A31Q9H0C2 315 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 MED28Q9H204 178 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 SLC25A32Q9H2D1 315 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 SLC45A2Q9UMX9 530 aa10.91□□□□□ -0.66
USP4-212ENST00000486549 H3BRN7 92 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 MPC2O95563 127 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 PET100P0DJ07 73 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 CXCL3P19876 107 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 S100A7P31151 101 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 CAMLGP49069 296 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 FCN2Q15485 313 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 MUC7Q8TAX7 377 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 UHRF2Q96PU4 802 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 SLC25A39Q9BZJ4 359 aaPredicted RBP10.9□□□□□ -0.66
USP4-212ENST00000486549 WDR83OSQ9Y284 106 aa10.9□□□□□ -0.66
USP4-212ENST00000486549 KNCNA6PVL3 124 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 FGF7P21781 194 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 GALR1P47211 349 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 PLP1P60201 277 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 SNRPD3P62318 126 aaKnown RBP10.89□□□□□ -0.67
USP4-212ENST00000486549 RAB31Q13636 194 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 ATP6V1FQ16864 119 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 VWC2Q2TAL6 325 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 DEFB135Q30KP9 77 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 STHQ8IWL8 128 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 OR5C1Q8NGR4 320 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 SHANK2-AS3Q9BTD1 123 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 AGRNO00468 2067 aa10.89□□□□□ -0.67
USP4-212ENST00000486549 COX7A2P2O60397 106 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 CLINT1Q14677 625 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 MIC13Q5XKP0 118 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 PATE2Q6UY27 113 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 OR11H7Q8NGC8 314 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 RNF126Q9BV68 326 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 ARV1Q9H2C2 271 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 MBD2Q9UBB5 411 aa10.88□□□□□ -0.67
USP4-212ENST00000486549 KIR2DL5BA0A0G2JN68 375 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 KIR2DL5BA0A0G2JPC4 375 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 LYL1P12980 280 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 ID1P41134 155 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 ACTL10Q5JWF8 245 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 PXDC1Q5TGL8 231 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 KIR2DL5AQ8N109 375 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 KIR2DL5BQ8NHK3 375 aa10.87□□□□□ -0.67
USP4-212ENST00000486549 THAP6Q8TBB0 222 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms