RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 A0A1W2PS18 150 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 CFDP00746 253 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 APOHP02749 345 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 HNRNPCP07910 306 aaKnown RBP eCLIP8.88□□□□□ -0.991e-6■■■□□ 15.2
SQSTM1-206ENST00000466342 S100A11P31949 105 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 BAXQ07812 192 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 OR2F1Q13607 317 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 VWC2Q2TAL6 325 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 TEPPQ6URK8 271 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 RBPMS2Q6ZRY4 209 aaKnown RBP8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 CYP2G1PQ6ZSU1 146 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 ST8SIA2Q92186 375 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 NARS2Q96I59 477 aaKnown RBP8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 RNF2Q99496 336 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 NEURL2Q9BR09 285 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 TMEM231Q9H6L2 316 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 UQCC1Q9NVA1 299 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 RABAC1Q9UI14 185 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 U3KQE9 123 aa8.88□□□□□ -0.99
SQSTM1-206ENST00000466342 IGHV3OR16-13A0A075B7E8 117 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 IGHV3-74A0A0B4J1X5 117 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 CD81P60033 236 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 RAP2BP61225 183 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 LYZP61626 148 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 SELENOTP62341 195 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 NHLH2Q02577 135 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 FGL1Q08830 312 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 GUCA2BQ16661 112 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 ATP6V1FQ16864 119 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 LAMTOR1Q6IAA8 161 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 LINC00322Q6ZN03 302 aaPredicted RBP8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 TMEM182Q6ZP80 229 aaPredicted RBP8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 BPIFCQ8NFQ6 507 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 THAP6Q8TBB0 222 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 SPAG8Q99932 426 aaPredicted RBP8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 FAM110AQ9BQ89 295 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 TMEM147Q9BVK8 224 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 RETNQ9HD89 108 aa8.87□□□□□ -0.99
SQSTM1-206ENST00000466342 IGHV3-66A0A0C4DH42 116 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 UBE2L5PA0A1B0GUS4 154 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 TSPAN4O14817 238 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 CD5P06127 495 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 CD7P09564 240 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 GATA2P23769 480 aaPredicted RBP8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 EIF2B2P49770 351 aaKnown RBP8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 FAM90A2PQ658T7 463 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 ZNF546Q86UE3 836 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 OR5C1Q8NGR4 320 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 GRAMD2BQ96HH9 432 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 PBDC1Q9BVG4 233 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 WDR83OSQ9Y284 106 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 HSPB11Q9Y547 144 aa8.86□□□□□ -0.99
SQSTM1-206ENST00000466342 OR11H12B2RN74 326 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 AGPAT2O15120 278 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 DFFBO76075 338 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 LINC00869P0C866 280 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 MED14OSP0DP75 135 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 RPL12P30050 165 aaKnown RBP8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 NUP62P37198 522 aaPredicted RBP8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 RAB31Q13636 194 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 TCF24Q7RTU0 167 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 GLMPQ8WWB7 406 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 MGST2Q99735 147 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 PFDN2Q9UHV9 154 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 SLC45A2Q9UMX9 530 aa8.85□□□□□ -0.99
SQSTM1-206ENST00000466342 BUB3O43684 328 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 PLP1P60201 277 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 CLINT1Q14677 625 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 Q5BKY6 102 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 C16orf54Q6UWD8 224 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 DEFB125Q8N687 156 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 CHAC2Q8WUX2 184 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 GGTLC1Q9BX51 225 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 VPS13DQ5THJ4 4388 aa8.84□□□□□ -0.99
SQSTM1-206ENST00000466342 OR4C46A6NHA9 309 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 MPDU1O75352 247 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 ORM2P19652 201 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 FGF7P21781 194 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 CAMLGP49069 296 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 PAFAH1B2P68402 229 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 PXDC1Q5TGL8 231 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 Q6ZNX1 250 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 STPG3Q8N7X2 389 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 OR1B1Q8NGR6 318 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 OR2T35Q8NGX2 323 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 PPP1R14BQ96C90 147 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 ATP5SQ99766 215 aa8.83□□□□□ -1
SQSTM1-206ENST00000466342 IGKV3-7A0A075B6H7 116 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 TRAV2A0A0B4J234 112 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 NUPR2A6NF83 97 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 HELTA6NFD8 242 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 G3V3Q6 166 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 HYPMO75409 117 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 S100A7P31151 101 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 AP2S1P53680 142 aaPredicted RBP8.82□□□□□ -1
SQSTM1-206ENST00000466342 RPL11P62913 178 aaKnown RBP8.82□□□□□ -1
SQSTM1-206ENST00000466342 OPCMLQ14982 345 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 C1orf194Q5T5A4 169 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 AQP10Q96PS8 301 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 NPCDR1Q9BY65 106 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms