RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 LINC00869P0C866 280 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 RAB31Q13636 194 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 ATP6V1FQ16864 119 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 ASCL2Q99929 193 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 C19orf73Q9NVV2 129 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 DOK5Q9P104 306 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 MBD2Q9UBB5 411 aa17.06■□□□□ 0.32
CCDC28B-203ENST00000461819 AGPAT2O15120 278 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 S100A7P31151 101 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 AP2S1P53680 142 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 NHLH2Q02577 135 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 BAXQ07812 192 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 SIGLEC15Q6ZMC9 328 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 RNF126Q9BV68 326 aa17.05■□□□□ 0.32
CCDC28B-203ENST00000461819 DNAH9Q9NYC9 4486 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 TRAV2A0A0B4J234 112 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 VWC2Q2TAL6 325 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 ODF3L2Q3SX64 289 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 OR5C1Q8NGR4 320 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 THAP6Q8TBB0 222 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 MGST2Q99735 147 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 FBXL17Q9UF56 701 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 SLC45A2Q9UMX9 530 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 WDR83OSQ9Y284 106 aa17.04■□□□□ 0.32
CCDC28B-203ENST00000461819 CAMLGP49069 296 aa17.03■□□□□ 0.32
CCDC28B-203ENST00000461819 RAP2BP61225 183 aa17.03■□□□□ 0.32
CCDC28B-203ENST00000461819 HYPMO75409 117 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 OR5G3P0C626 314 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 CMC4P56277 68 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 C1orf194Q5T5A4 169 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 OR8I2Q8N0Y5 310 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 STPG3Q8N7X2 389 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 ARL6Q9H0F7 186 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 SLC25A22Q9H936 323 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 HIGD1AQ9Y241 93 aa17.02■□□□□ 0.32
CCDC28B-203ENST00000461819 GIPP09681 153 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 FGF7P21781 194 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 RPL12P30050 165 aaKnown RBP17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 CLINT1Q14677 625 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 SBSPONQ8IVN8 264 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 ASB13Q8WXK3 278 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 FAM110AQ9BQ89 295 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 MAP6D1Q9H9H5 199 aa17.01■□□□□ 0.31
CCDC28B-203ENST00000461819 NHLRC4P0CG21 123 aaPredicted RBP17■□□□□ 0.31
CCDC28B-203ENST00000461819 PLP1P60201 277 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 PXDC1Q5TGL8 231 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 S100A7AQ86SG5 101 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 GGTLC1Q9BX51 225 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 NRN1Q9NPD7 142 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 HSPB11Q9Y547 144 aa17■□□□□ 0.31
CCDC28B-203ENST00000461819 ZNF98A6NK75 572 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 K7EQG2 157 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 LYL1P12980 280 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 FGL1Q08830 312 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 APRG1Q8IVJ8 170 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 FAM24BQ8N5W8 94 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 DCANP1Q8TF63 244 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 COL7A1Q02388 2944 aa16.99■□□□□ 0.31
CCDC28B-203ENST00000461819 RBMY1BA6NDE4 496 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 RBMY1EA6NEQ0 496 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 COX7A2P2O60397 106 aa16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 MPDU1O75352 247 aa16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 RBMY1DP0C7P1 496 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 LEMD1Q68G75 181 aa16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 UHRF2Q96PU4 802 aa16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 SCRT1Q9BWW7 348 aa16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 SLC25A39Q9BZJ4 359 aaPredicted RBP16.98■□□□□ 0.31
CCDC28B-203ENST00000461819 H3BRN7 92 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 ZNF688P0C7X2 276 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 GALR1P47211 349 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 HAGHQ16775 308 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 MIC13Q5XKP0 118 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 Q6ZRG5 221 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 CITED4Q96RK1 184 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 ATP5SQ99766 215 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 SHANK2-AS3Q9BTD1 123 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 ARV1Q9H2C2 271 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 SLC25A32Q9H2D1 315 aa16.97■□□□□ 0.31
CCDC28B-203ENST00000461819 LOC102724200A0A096LPH7 203 aaPredicted RBP16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 DEFB131AP59861 70 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 OPCMLQ14982 345 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 ZNF124Q15973 351 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 GPR82Q96P67 336 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 NPCDR1Q9BY65 106 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 SMIM3Q9BZL3 60 aa16.96■□□□□ 0.31
CCDC28B-203ENST00000461819 RPL29P47914 159 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 B2MP61769 119 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 SNRPD3P62318 126 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PRR20EP86478 221 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PRR20CP86479 221 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PRR20DP86480 221 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PRR20BP86481 221 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PRR20AP86496 221 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 PATE2Q6UY27 113 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 LINC00322Q6ZN03 302 aaPredicted RBP16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 ZMAT4Q9H898 229 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 RNF24Q9Y225 148 aa16.95■□□□□ 0.3
CCDC28B-203ENST00000461819 ELOA3CA0A087WX78 387 aaPredicted RBP16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 C10orf113Q5VZT2 155 aa16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 LINC00305Q7Z4B0 112 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms