RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 OR5AC2Q9NZP5 309 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 K7EQG2 157 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 RPL35AP18077 110 aaKnown RBP13.85□□□□□ -0.19
SHH-203ENST00000435425 NUP62P37198 522 aaPredicted RBP13.85□□□□□ -0.19
SHH-203ENST00000435425 SULT1A1P50225 295 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 AP2S1P53680 142 aaPredicted RBP13.85□□□□□ -0.19
SHH-203ENST00000435425 DEFB131AP59861 70 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 STX12Q86Y82 276 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 TM2D3Q9BRN9 247 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 GGTLC1Q9BX51 225 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 RETNQ9HD89 108 aa13.85□□□□□ -0.19
SHH-203ENST00000435425 TRAV2A0A0B4J234 112 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 E5RGE8 158 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 H0YIZ8 118 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 LINC00869P0C866 280 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 LEMD1Q68G75 181 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 PPP1R1CQ8WVI7 109 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 FAM110AQ9BQ89 295 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 SPATA25Q9BR10 227 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 TMEM147Q9BVK8 224 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 SLC25A22Q9H936 323 aa13.84□□□□□ -0.19
SHH-203ENST00000435425 OR5G3P0C626 314 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 ZNF688P0C7X2 276 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 S100A11P31949 105 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 SELENOTP62341 195 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 NHLH2Q02577 135 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 RGS21Q2M5E4 152 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 OR8I2Q8N0Y5 310 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 DCANP1Q8TF63 244 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 UQCC1Q9NVA1 299 aa13.83□□□□□ -0.2
SHH-203ENST00000435425 UBE2L5PA0A1B0GUS4 154 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 AGPAT2O15120 278 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 HBG1P69891 147 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 HBG2P69892 147 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 MGST2Q99735 147 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 SLC25A31Q9H0C2 315 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 ARL6Q9H0F7 186 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 MED28Q9H204 178 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 FBXL17Q9UF56 701 aa13.82□□□□□ -0.2
SHH-203ENST00000435425 ZNF98A6NK75 572 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 HYPMO75409 117 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 MPC2O95563 127 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 CXCL3P19876 107 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 RAP2BP61225 183 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 EWSR1Q01844 656 aaKnown RBP eCLIP13.81□□□□□ -0.2
SHH-203ENST00000435425 FCN2Q15485 313 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 C1orf194Q5T5A4 169 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 ZNF546Q86UE3 836 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 NRN1Q9NPD7 142 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 HIGD1AQ9Y241 93 aa13.81□□□□□ -0.2
SHH-203ENST00000435425 CAMLGP49069 296 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 BAXQ07812 192 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 RAB31Q13636 194 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 ATP6V1FQ16864 119 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 RNF126Q9BV68 326 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 SCRT1Q9BWW7 348 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 SLC25A32Q9H2D1 315 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 SLC45A2Q9UMX9 530 aa13.8□□□□□ -0.2
SHH-203ENST00000435425 FGF7P21781 194 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 S100A7P31151 101 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 APOC4P55056 127 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 PSMG4Q5JS54 123 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 OR5C1Q8NGR4 320 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 UHRF2Q96PU4 802 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 SLC25A39Q9BZJ4 359 aaPredicted RBP13.79□□□□□ -0.2
SHH-203ENST00000435425 WDR83OSQ9Y284 106 aa13.79□□□□□ -0.2
SHH-203ENST00000435425 KNCNA6PVL3 124 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 H3BRN7 92 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 PET100P0DJ07 73 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 PLP1P60201 277 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 VWC2Q2TAL6 325 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 MIC13Q5XKP0 118 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 PATE2Q6UY27 113 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 OR11H7Q8NGC8 314 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 WWC2-AS2Q96NR7 200 aa13.78□□□□□ -0.2
SHH-203ENST00000435425 GALR1P47211 349 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 SNRPD3P62318 126 aaKnown RBP13.77□□□□□ -0.21
SHH-203ENST00000435425 CLINT1Q14677 625 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 STHQ8IWL8 128 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 SHANK2-AS3Q9BTD1 123 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 RSG1Q9BU20 258 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 ARV1Q9H2C2 271 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 MBD2Q9UBB5 411 aa13.77□□□□□ -0.21
SHH-203ENST00000435425 COX7A2P2O60397 106 aa13.76□□□□□ -0.21
SHH-203ENST00000435425 THAP6Q8TBB0 222 aa13.76□□□□□ -0.21
SHH-203ENST00000435425 LINC00052Q96N35 136 aa13.76□□□□□ -0.21
SHH-203ENST00000435425 AGRNO00468 2067 aa13.76□□□□□ -0.21
SHH-203ENST00000435425 ID1P41134 155 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 FGL1Q08830 312 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 OXA1LQ15070 435 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 DEFB135Q30KP9 77 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 ACTL10Q5JWF8 245 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 PXDC1Q5TGL8 231 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 Q6ZRG5 221 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 S100A7AQ86SG5 101 aa13.75□□□□□ -0.21
SHH-203ENST00000435425 HUWE1Q7Z6Z7 4374 aaKnown RBP13.74□□□□□ -0.21
SHH-203ENST00000435425 KIR2DL5BA0A0G2JN68 375 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 KIR2DL5BA0A0G2JPC4 375 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 RPL12P30050 165 aaKnown RBP13.74□□□□□ -0.21
SHH-203ENST00000435425 OPCMLQ14982 345 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms