RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 HIST1H2BLQ99880 126 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 FAM219BQ5XKK7 198 aa12.9□□□□□ -0.34
HCFC1-201ENST00000310441 SUMO4Q6EEV6 95 aa12.9□□□□□ -0.35
HCFC1-201ENST00000310441 INSP01308 110 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 TRGV9Q99603 122 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 PROB1E7EW31 1015 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 EVI2AP22794 236 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 TGIF1Q15583 401 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 CDCP2Q5VXM1 449 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 OOSP1A8MZH6 123 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 USMG5Q96IX5 58 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 PLSCR4Q9NRQ2 329 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 MRPL27Q9P0M9 148 aaKnown RBP12.89□□□□□ -0.35
HCFC1-201ENST00000310441 ANAPC10Q9UM13 185 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 CRYBA2P53672 197 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 RAMP3O60896 148 aa12.89□□□□□ -0.35
HCFC1-201ENST00000310441 RSPO3Q9BXY4 272 aaPredicted RBP12.89□□□□□ -0.35
HCFC1-201ENST00000310441 SMAD7O15105 426 aaKnown RBP12.88□□□□□ -0.35
HCFC1-201ENST00000310441 OCIAD2Q56VL3 154 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 SPRED2Q7Z698 418 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 RNF5Q99942 180 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 AGMATQ9BSE5 352 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 SFTA2Q6UW10 78 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 PKIGQ9Y2B9 76 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 PRR14LQ5THK1 2151 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 TMEM8BA6NDV4 472 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 DUTP33316 252 aaKnown RBP12.88□□□□□ -0.35
HCFC1-201ENST00000310441 CEACAM8P31997 349 aaPredicted RBP12.88□□□□□ -0.35
HCFC1-201ENST00000310441 RCHY1Q96PM5 261 aa12.88□□□□□ -0.35
HCFC1-201ENST00000310441 MUC21A0A0G2JKD1 596 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 MUC21A0A140T8X8 626 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 CCL1P22362 96 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 MUC21Q5SSG8 566 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 TIMM21Q9BVV7 248 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 A0A1B0GTI1 187 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 OR9G9P0C7N8 305 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 BCL6BQ8N143 479 aaPredicted RBP12.87□□□□□ -0.35
HCFC1-201ENST00000310441 GFRA4Q9GZZ7 299 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 NUP210Q8TEM1 1887 aaPredicted RBP12.87□□□□□ -0.35
HCFC1-201ENST00000310441 MINOS1Q5TGZ0 78 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 MINOS1-NBL1R4GNA1 71 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 INS-IGF2F8WCM5 200 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 GNG5P63218 68 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 C6orf226Q5I0X4 101 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 SELLP14151 372 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 ACTL10Q5JWF8 245 aa12.87□□□□□ -0.35
HCFC1-201ENST00000310441 SRSF8Q9BRL6 282 aaKnown RBP12.86□□□□□ -0.35
HCFC1-201ENST00000310441 MBNL3Q9NUK0 354 aaKnown RBP12.86□□□□□ -0.35
HCFC1-201ENST00000310441 METRNQ9UJH8 293 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 PDE6HQ13956 83 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 AGRNO00468 2067 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 WDR90Q96KV7 1748 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 ZNF138P52744 262 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 FDCSPQ8NFU4 85 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 NRTNQ99748 197 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 PLXNA4Q9HCM2 1894 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 FAM223BA6NKX1 122 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 FAM223AQ8IWN6 122 aa12.86□□□□□ -0.35
HCFC1-201ENST00000310441 A0A0G2JMM0 328 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 A0A1W2PPB8 328 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 KIR3DP1A8MWS1 328 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 MLNRO43193 412 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 CD300EQ496F6 205 aaPredicted RBP12.85□□□□□ -0.35
HCFC1-201ENST00000310441 IGHV3OR16-10A0A075B7F0 116 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 D6R8Y8 96 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 CEACAM1P13688 526 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 C1orf194Q5T5A4 169 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 LOC105371267A0A1B0GV96 52 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 KIAA1671Q9BY89 1806 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 SOCS3O14543 225 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 SPSB2Q99619 263 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 WFDC6Q9BQY6 131 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 SNHG12Q9BXW3 62 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 C9orf139Q6ZV77 190 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 FNDC10F2Z333 226 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 CD5LO43866 347 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 GAGE2AQ6NT46 116 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 LINC01560Q8TB33 94 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 PCDH15Q96QU1 1955 aa12.85□□□□□ -0.35
HCFC1-201ENST00000310441 PSG7Q13046 419 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 EIF4EBP2Q13542 120 aaPredicted RBP12.84□□□□□ -0.35
HCFC1-201ENST00000310441 Q5BKY6 102 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 KIAA1549LQ6ZVL6 1849 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 SPINK8P0C7L1 97 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 GUSBP1Q15486 140 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 BOD1L2Q8IYS8 172 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 C15orf32Q32M92 178 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 UBE2WQ96B02 151 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 DSCAML1Q8TD84 2053 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 GAGE12BA1L429 117 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 A0A1W2PRX2 142 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 MRAPQ8TCY5 172 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 GLMPQ8WWB7 406 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 LHX2P50458 406 aa12.84□□□□□ -0.35
HCFC1-201ENST00000310441 UBE2V1Q13404 147 aa12.83□□□□□ -0.35
HCFC1-201ENST00000310441 PPP1R32Q7Z5V6 425 aa12.83□□□□□ -0.35
HCFC1-201ENST00000310441 RNF222A6NCQ9 220 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 FAM216BQ8N7L0 139 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 UBL5Q9BZL1 73 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 TRAV41A0A0B4J266 112 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms