RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GGTLC1Q9BX51 225 aa9.56□□□□□ -0.88
SS18-202ENST00000269138 TMEM231Q9H6L2 316 aa9.56□□□□□ -0.88
SS18-202ENST00000269138 BMI1P35226 326 aa9.55□□□□□ -0.88
SS18-202ENST00000269138 RPL11P62913 178 aaKnown RBP9.55□□□□□ -0.88
SS18-202ENST00000269138 MIC13Q5XKP0 118 aa9.55□□□□□ -0.88
SS18-202ENST00000269138 PATE2Q6UY27 113 aa9.55□□□□□ -0.88
SS18-202ENST00000269138 ZNF546Q86UE3 836 aa9.55□□□□□ -0.88
SS18-202ENST00000269138 SPAG8Q99932 426 aaPredicted RBP9.55□□□□□ -0.88
SS18-202ENST00000269138 ARL6Q9H0F7 186 aa9.55□□□□□ -0.88
SS18-202ENST00000269138 hCG_2014768A0A024R1R8 64 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 FXYD6-FXYD2A0A087WZ82 144 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 HYPMO75409 117 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 CD81P60033 236 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 PLP1P60201 277 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 RAB31Q13636 194 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 WFDC3Q8IUB2 231 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 PPP1R14BQ96C90 147 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 GRAMD2BQ96HH9 432 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 ATP5SQ99766 215 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 NEURL2Q9BR09 285 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 WFDC10AQ9H1F0 79 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 MS4A6AQ9H2W1 248 aa9.54□□□□□ -0.88
SS18-202ENST00000269138 OR5G3P0C626 314 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 PRR20EP86478 221 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 PRR20CP86479 221 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 PRR20DP86480 221 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 PRR20BP86481 221 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 PRR20AP86496 221 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 OPCMLQ14982 345 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 LEMD1Q68G75 181 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 GTSCR1Q86UQ5 136 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 AQP10Q96PS8 301 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 UHRF2Q96PU4 802 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 SCRT1Q9BWW7 348 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 NPCDR1Q9BY65 106 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 C19orf73Q9NVV2 129 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 HIGD1AQ9Y241 93 aa9.53□□□□□ -0.88
SS18-202ENST00000269138 RNF222A6NCQ9 220 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 ZNF98A6NK75 572 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 RPL29P47914 159 aaKnown RBP9.52□□□□□ -0.88
SS18-202ENST00000269138 FAM24BQ8N5W8 94 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 STXBP6Q8NFX7 210 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 SLC25A39Q9BZJ4 359 aaPredicted RBP9.52□□□□□ -0.88
SS18-202ENST00000269138 WDR61Q9GZS3 305 aaKnown RBP9.52□□□□□ -0.88
SS18-202ENST00000269138 SLC39A9Q9NUM3 307 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 FBXL17Q9UF56 701 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 UBQLN2Q9UHD9 624 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 TNFSF18Q9UNG2 199 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 PXMP4Q9Y6I8 212 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 SMAD5-AS1Q9Y6J3 95 aa9.52□□□□□ -0.88
SS18-202ENST00000269138 A0A1B0GVG6 124 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 OR4C46A6NHA9 309 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 H3BRN7 92 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 DNASE2O00115 360 aaPredicted RBP9.51□□□□□ -0.89
SS18-202ENST00000269138 MPDU1O75352 247 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 CD5P06127 495 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 NUP62P37198 522 aaPredicted RBP9.51□□□□□ -0.89
SS18-202ENST00000269138 C1orf194Q5T5A4 169 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 SIGLEC15Q6ZMC9 328 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 DEFB125Q8N687 156 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 TMEM37Q8WXS4 190 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 SHANK2-AS3Q9BTD1 123 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 ARV1Q9H2C2 271 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 SLC25A32Q9H2D1 315 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 SLC25A22Q9H936 323 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 PFDN2Q9UHV9 154 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 RFNGQ9Y644 331 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 HELTA6NFD8 242 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 OR11H12B2RN74 326 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 COX7A2P2O60397 106 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 IFNA5P01569 189 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 IGHV4-30-4P0DP06 118 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 AP2S1P53680 142 aaPredicted RBP9.51□□□□□ -0.89
SS18-202ENST00000269138 B2MP61769 119 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 PAFAH1B2P68402 229 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 ODF3L2Q3SX64 289 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 GCSAMLQ5JQS6 135 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 MORN5Q5VZ52 161 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 OR8I2Q8N0Y5 310 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 INO80EQ8NBZ0 244 aaPredicted RBP9.51□□□□□ -0.89
SS18-202ENST00000269138 OR11H4Q8NGC9 324 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 ST6GAL2Q96JF0 529 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 RSG1Q9BU20 258 aa9.51□□□□□ -0.89
SS18-202ENST00000269138 K7EQG2 157 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 PXDC1Q5TGL8 231 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 Q6ZRG5 221 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 SCGB1C1Q8TD33 95 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 DCANP1Q8TF63 244 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 C17orf77Q96MU5 243 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 DNAJC4Q9NNZ3 241 aa9.5□□□□□ -0.89
SS18-202ENST00000269138 PRKDCP78527 4128 aaKnown RBP9.49□□□□□ -0.89
SS18-202ENST00000269138 ARPC5O15511 151 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 ZNF124Q15973 351 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 C10orf113Q5VZT2 155 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 LINC00305Q7Z4B0 112 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 ZNF709Q8N972 641 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 CITED4Q96RK1 184 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 NRN1Q9NPD7 142 aa9.49□□□□□ -0.89
SS18-202ENST00000269138 ELOA3CA0A087WX78 387 aaPredicted RBP9.48□□□□□ -0.89
SS18-202ENST00000269138 TRAV2A0A0B4J234 112 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms