RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 HIVEP2P31629 2446 aa17.72■□□□□ 0.43
CDX1-201ENST00000231656 PGPEP1LA6NFU8 196 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 HSPB9Q9BQS6 159 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 H7BYZ3 331 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 HNF1AP20823 631 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 OR5R1Q8NH85 324 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 C2CD4CQ8TF44 421 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 TMEM160Q9NX00 188 aa17.71■□□□□ 0.43
CDX1-201ENST00000231656 C9JCJ5 164 aa17.7■□□□□ 0.42
CDX1-201ENST00000231656 CRYBB3P26998 211 aa17.7■□□□□ 0.42
CDX1-201ENST00000231656 RPL35P42766 123 aaKnown RBP17.7■□□□□ 0.42
CDX1-201ENST00000231656 STXBP6Q8NFX7 210 aa17.7■□□□□ 0.42
CDX1-201ENST00000231656 AURKAIP1Q9NWT8 199 aaPredicted RBP17.7■□□□□ 0.42
CDX1-201ENST00000231656 SH2D7A6NKC9 451 aaPredicted RBP17.69■□□□□ 0.42
CDX1-201ENST00000231656 PFN1P07737 140 aaKnown RBP17.69■□□□□ 0.42
CDX1-201ENST00000231656 CD99P14209 185 aa17.69■□□□□ 0.42
CDX1-201ENST00000231656 SUMO1P63165 101 aaKnown RBP17.69■□□□□ 0.42
CDX1-201ENST00000231656 OR5T1Q8NG75 326 aa17.69■□□□□ 0.42
CDX1-201ENST00000231656 TRBV24-1A0A075B6N3 115 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 RPS10P46783 165 aaKnown RBP17.68■□□□□ 0.42
CDX1-201ENST00000231656 OCC1Q8TAD7 63 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 ELOVL1Q9BW60 279 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 HIGD1AQ9Y241 93 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 HOXA3O43365 443 aaPredicted RBP17.68■□□□□ 0.42
CDX1-201ENST00000231656 FABP1P07148 127 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 RD3LP0DJH9 198 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 FOSL1P15407 271 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 LYZP61626 148 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 SIGLECL1Q8N7X8 197 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 FAM210BQ96KR6 192 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 LY96Q9Y6Y9 160 aa17.68■□□□□ 0.42
CDX1-201ENST00000231656 F8W735 103 aaPredicted RBP17.67■□□□□ 0.42
CDX1-201ENST00000231656 M0QZK8 103 aa17.67■□□□□ 0.42
CDX1-201ENST00000231656 GALR1P47211 349 aa17.67■□□□□ 0.42
CDX1-201ENST00000231656 SGMS2Q8NHU3 365 aa17.67■□□□□ 0.42
CDX1-201ENST00000231656 BIN3Q9NQY0 253 aa17.67■□□□□ 0.42
CDX1-201ENST00000231656 VPREB3Q9UKI3 123 aa17.67■□□□□ 0.42
CDX1-201ENST00000231656 NDUFB8O95169 186 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 TOMM40O96008 361 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 GP9P14770 177 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 MFAP4P55083 255 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 PYGO2Q9BRQ0 406 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 MRPL27Q9P0M9 148 aaKnown RBP17.66■□□□□ 0.42
CDX1-201ENST00000231656 S4R3C0 116 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 KLK9Q2XQG4 91 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 ZNF329Q86UD4 541 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 NECAP1Q8NC96 275 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 FAM110DQ8TAY7 271 aaPredicted RBP17.66■□□□□ 0.42
CDX1-201ENST00000231656 OR5B12Q96R08 314 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 SAV1Q9H4B6 383 aaPredicted RBP17.66■□□□□ 0.42
CDX1-201ENST00000231656 KLK9Q9UKQ9 250 aa17.66■□□□□ 0.42
CDX1-201ENST00000231656 TRAV30A0A087WSZ9 112 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 HELTA6NFD8 242 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 K7EN84 100 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 ATP6V0E1O15342 81 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 MYCNOSP40205 109 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 SFRP2Q96HF1 295 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 SLC25A39Q9BZJ4 359 aaPredicted RBP17.65■□□□□ 0.42
CDX1-201ENST00000231656 THYN1Q9P016 225 aa17.65■□□□□ 0.42
CDX1-201ENST00000231656 LINC01548A6NM66 108 aa17.64■□□□□ 0.41
CDX1-201ENST00000231656 PPP1R2P9O14990 202 aa17.64■□□□□ 0.41
CDX1-201ENST00000231656 OR2J3O76001 311 aa17.64■□□□□ 0.41
CDX1-201ENST00000231656 YPEL3P61236 119 aaPredicted RBP17.64■□□□□ 0.41
CDX1-201ENST00000231656 CENPWQ5EE01 88 aa17.64■□□□□ 0.41
CDX1-201ENST00000231656 C21orf62Q9NYP8 219 aa17.64■□□□□ 0.41
CDX1-201ENST00000231656 GNG7O60262 68 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 S100PP25815 95 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 BLCAPP62952 87 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 LEMD1Q68G75 181 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 TEX38Q6PEX7 206 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 ZNF491Q8N8L2 437 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 WI2-2373I1.2A0A1W2PRP0 233 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 C9orf152Q5JTZ5 239 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 UNQ5815/PRO19632Q6UWF5 114 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 TMEM14CQ9P0S9 112 aa17.63■□□□□ 0.41
CDX1-201ENST00000231656 CYSRT1A8MQ03 144 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 NBEAP1P0C6P0 100 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 HIST1H1BP16401 226 aaKnown RBP17.62■□□□□ 0.41
CDX1-201ENST00000231656 GNG4P50150 75 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 ECSCRQ19T08 205 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 SMUG1Q53HV7 270 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 IGF2BP2-AS1Q96M15 143 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 CDC42EP3Q9UKI2 254 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 CUBNO60494 3623 aa17.62■□□□□ 0.41
CDX1-201ENST00000231656 SNRPCP09234 159 aaKnown RBP17.61■□□□□ 0.41
CDX1-201ENST00000231656 RNF125Q96EQ8 232 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 TCEAL7Q9BRU2 100 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 SHANK2-AS3Q9BTD1 123 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 FBXL7Q9UJT9 491 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 NSD1Q96L73 2696 aaPredicted RBP17.61■□□□□ 0.41
CDX1-201ENST00000231656 H3BRN7 92 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 TGOLN2O43493 480 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 GGCTO75223 188 aaKnown RBP17.61■□□□□ 0.41
CDX1-201ENST00000231656 IGHG2P01859 326 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 FCGR2BP31994 310 aaPredicted RBP17.61■□□□□ 0.41
CDX1-201ENST00000231656 SCGB2A2Q13296 93 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 Q56UQ5 140 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 ZNF600Q6ZNG1 722 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 Q6ZS46 218 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 Q71RC1 249 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms