RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PI3P19957 117 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 NPPCP23582 126 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 HOXA1P49639 335 aaPredicted RBP13.49□□□□□ -0.25
CLN3-241ENST00000635861 TMEM187Q14656 261 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 IZUMO4Q1ZYL8 232 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 BSXQ3C1V8 233 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 AARDQ4LEZ3 155 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 SPINK9Q5DT21 86 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 OR4X1Q8NH49 305 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 METTL26Q96S19 204 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 VPS13DQ5THJ4 4388 aa13.49□□□□□ -0.25
CLN3-241ENST00000635861 APOHP02749 345 aaPredicted RBP13.48□□□□□ -0.25
CLN3-241ENST00000635861 OPRK1P41145 380 aa13.48□□□□□ -0.25
CLN3-241ENST00000635861 DEFB131AP59861 70 aa13.48□□□□□ -0.25
CLN3-241ENST00000635861 RPL11P62913 178 aaKnown RBP13.48□□□□□ -0.25
CLN3-241ENST00000635861 OPCMLQ14982 345 aa13.48□□□□□ -0.25
CLN3-241ENST00000635861 SURF2Q15527 256 aaPredicted RBP13.48□□□□□ -0.25
CLN3-241ENST00000635861 LGALSLQ3ZCW2 172 aaPredicted RBP13.48□□□□□ -0.25
CLN3-241ENST00000635861 OR52E5Q8NH55 327 aa13.48□□□□□ -0.25
CLN3-241ENST00000635861 GRAMD2BQ96HH9 432 aa13.48□□□□□ -0.25
CLN3-241ENST00000635861 NARS2Q96I59 477 aaKnown RBP13.48□□□□□ -0.25
CLN3-241ENST00000635861 A0A1B0GU03 582 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 CRYBB3P26998 211 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 COMMD7Q86VX2 200 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 STHQ8IWL8 128 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 LILRB2Q8N423 598 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 RNASE11Q8TAA1 199 aaKnown RBP13.47□□□□□ -0.25
CLN3-241ENST00000635861 DNAH6Q9C0G6 4158 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 A0A0D9SG52 128 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 RPS10-NUDT3A0A1W2PQS6 291 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 CXCL3P19876 107 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 S100A11P31949 105 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 SPCS3P61009 180 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 TOR2AQ5JU69 321 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 MORN3Q6PF18 240 aaPredicted RBP13.47□□□□□ -0.25
CLN3-241ENST00000635861 MARCH1Q8TCQ1 289 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 HRH4Q9H3N8 390 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 FNDC4Q9H6D8 234 aaPredicted RBP13.47□□□□□ -0.25
CLN3-241ENST00000635861 CACFD1Q9UGQ2 172 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 GPR132Q9UNW8 380 aa13.47□□□□□ -0.25
CLN3-241ENST00000635861 SMLR1H3BR10 107 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 K7EQG2 157 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 CDS2O95674 445 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 SPP1P10451 314 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 LEMD1Q68G75 181 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 TMEM230Q96A57 120 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 TMEM222Q9H0R3 208 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.46□□□□□ -0.26
CLN3-241ENST00000635861 RABAC1Q9UI14 185 aa13.46□□□□□ -0.26
CLN3-241ENST00000635861 C11orf94C9JXX5 98 aa13.45□□□□□ -0.26
CLN3-241ENST00000635861 P2RY1P47900 373 aa13.45□□□□□ -0.26
CLN3-241ENST00000635861 NANOS2P60321 138 aaKnown RBP13.45□□□□□ -0.26
CLN3-241ENST00000635861 SP6Q3SY56 376 aa13.45□□□□□ -0.26
CLN3-241ENST00000635861 C2CD4CQ8TF44 421 aa13.45□□□□□ -0.26
CLN3-241ENST00000635861 RBPMSQ93062 196 aaKnown RBP13.45□□□□□ -0.26
CLN3-241ENST00000635861 C14orf166Q9Y224 244 aaKnown RBP13.45□□□□□ -0.26
CLN3-241ENST00000635861 IGHV3-66A0A0C4DH42 116 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 A0A0G2JRQ6 117 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 SLC25A4P12235 298 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 TRPT1Q86TN4 253 aaKnown RBP13.44□□□□□ -0.26
CLN3-241ENST00000635861 SLC51BQ86UW2 128 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 FAM24BQ8N5W8 94 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 OR11H4Q8NGC9 324 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 RNASEH2CQ8TDP1 164 aaKnown RBP13.44□□□□□ -0.26
CLN3-241ENST00000635861 SCGB3A2Q96PL1 93 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 RTBDNQ9BSG5 229 aaPredicted RBP13.44□□□□□ -0.26
CLN3-241ENST00000635861 FBXL17Q9UF56 701 aa13.44□□□□□ -0.26
CLN3-241ENST00000635861 HELTA6NFD8 242 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 IGKV1-17P01599 117 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 MIFP14174 115 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 C2orf83Q53S99 150 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 EIF4E3Q8N5X7 224 aaKnown RBP13.43□□□□□ -0.26
CLN3-241ENST00000635861 STXBP6Q8NFX7 210 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 OR1S2Q8NGQ3 325 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 PHYHIPLQ96FC7 376 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 SLC25A32Q9H2D1 315 aa13.43□□□□□ -0.26
CLN3-241ENST00000635861 MRPL36Q9P0J6 103 aaKnown RBP13.43□□□□□ -0.26
CLN3-241ENST00000635861 TEX13DA0A0J9YY54 714 aaPredicted RBP13.42□□□□□ -0.26
CLN3-241ENST00000635861 OR5AC1P0C628 307 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 YPEL3P61236 119 aaPredicted RBP13.42□□□□□ -0.26
CLN3-241ENST00000635861 ETFRF1Q6IPR1 90 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 Q6ZRM9 215 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 RPP25LQ8N5L8 163 aaKnown RBP13.42□□□□□ -0.26
CLN3-241ENST00000635861 Q8NAQ8 132 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 DCANP1Q8TF63 244 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 GLYATL2Q8WU03 294 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 NAA60Q9H7X0 242 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 FLVCR2Q9UPI3 526 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 U3KQE9 123 aa13.42□□□□□ -0.26
CLN3-241ENST00000635861 Q8WTZ3 238 aa13.41□□□□□ -0.26
CLN3-241ENST00000635861 SEPSECSQ9HD40 501 aaKnown RBP13.41□□□□□ -0.26
CLN3-241ENST00000635861 HEYLQ9NQ87 328 aaPredicted RBP13.41□□□□□ -0.26
CLN3-241ENST00000635861 ZNF705EA8MWA4 302 aaPredicted RBP13.4□□□□□ -0.26
CLN3-241ENST00000635861 IGLC1P0CG04 106 aa13.4□□□□□ -0.26
CLN3-241ENST00000635861 UBE2MP61081 183 aaKnown RBP13.4□□□□□ -0.26
CLN3-241ENST00000635861 OR2F1Q13607 317 aa13.4□□□□□ -0.26
CLN3-241ENST00000635861 ZNF345Q14585 488 aa13.4□□□□□ -0.26
CLN3-241ENST00000635861 MLANAQ16655 118 aa13.4□□□□□ -0.26
CLN3-241ENST00000635861 TIGITQ495A1 244 aa13.4□□□□□ -0.26
CLN3-241ENST00000635861 SLC24A4Q8NFF2 622 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms