RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 C9orf66Q5T8R8 295 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 ADAMTSL5Q6ZMM2 481 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 OR51G1Q8NGK1 321 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 GINS3Q9BRX5 216 aa13.82□□□□□ -0.2
CCDC40-213ENST00000574933 HMSDA8MTL9 139 aa13.81□□□□□ -0.2
CCDC40-213ENST00000574933 MPDU1O75352 247 aa13.81□□□□□ -0.2
CCDC40-213ENST00000574933 TM4SF20Q53R12 229 aa13.81□□□□□ -0.2
CCDC40-213ENST00000574933 CYP2G1PQ6ZSU1 146 aa13.81□□□□□ -0.2
CCDC40-213ENST00000574933 INO80EQ8NBZ0 244 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-213ENST00000574933 ATP5SQ99766 215 aa13.81□□□□□ -0.2
CCDC40-213ENST00000574933 MRPL27Q9P0M9 148 aaKnown RBP13.81□□□□□ -0.2
CCDC40-213ENST00000574933 SMLR1H3BR10 107 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 DFFBO76075 338 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 YIF1AO95070 293 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 IGLL1P15814 213 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 CBLN1P23435 193 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 PLP1P60201 277 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 CLINT1Q14677 625 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 AKAP14Q86UN6 197 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 OR11H4Q8NGC9 324 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 MGST2Q99735 147 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 C20orf24Q9BUV8 137 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 PARD6GQ9BYG4 376 aaPredicted RBP13.8□□□□□ -0.2
CCDC40-213ENST00000574933 SLC45A2Q9UMX9 530 aa13.8□□□□□ -0.2
CCDC40-213ENST00000574933 UBE2L5PA0A1B0GUS4 154 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 AGPAT2O15120 278 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 FOLR2P14207 255 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 CRYBB3P26998 211 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 RAB31Q13636 194 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 SAMD5Q5TGI4 173 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 BTNL8Q6UX41 500 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 TMEM182Q6ZP80 229 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-213ENST00000574933 BPIFCQ8NFQ6 507 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 RNF125Q96EQ8 232 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 U3KQE9 123 aa13.79□□□□□ -0.2
CCDC40-213ENST00000574933 IGHV3OR16-8A0A075B7F1 116 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 IGHV7-4-1A0A0J9YVY3 117 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 SAP30O75446 220 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 IGLV1-51P01701 117 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 IL4P05112 153 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 ZNF345Q14585 488 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 OPCMLQ14982 345 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 USF2Q15853 346 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-213ENST00000574933 GGTLC1Q9BX51 225 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 WFDC1Q9HC57 220 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 TECRQ9NZ01 308 aaKnown RBP13.78□□□□□ -0.2
CCDC40-213ENST00000574933 FBXL17Q9UF56 701 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 SMPXQ9UHP9 88 aa13.78□□□□□ -0.2
CCDC40-213ENST00000574933 C1QBP02746 253 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 EDN2P20800 178 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 CAMLGP49069 296 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 OR2F1Q13607 317 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 OXLD1Q5BKU9 147 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 METTL26Q96S19 204 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 WDR61Q9GZS3 305 aaKnown RBP13.77□□□□□ -0.21
CCDC40-213ENST00000574933 MFFQ9GZY8 342 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 VSIRQ9H7M9 311 aa13.77□□□□□ -0.21
CCDC40-213ENST00000574933 ARPC5O15511 151 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 ZNF207O43670 478 aaKnown RBP13.76□□□□□ -0.21
CCDC40-213ENST00000574933 LINC00869P0C866 280 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 FGF7P21781 194 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 NPPCP23582 126 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 GATA2P23769 480 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-213ENST00000574933 RPL29P47914 159 aaKnown RBP13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PRR20EP86478 221 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PRR20CP86479 221 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PRR20DP86480 221 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PRR20BP86481 221 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PRR20AP86496 221 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 PXDC1Q5TGL8 231 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 OR2K2Q8NGT1 345 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 NEURL2Q9BR09 285 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 NPCDR1Q9BY65 106 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 SMIM3Q9BZL3 60 aa13.76□□□□□ -0.21
CCDC40-213ENST00000574933 CHEK1O14757 476 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 IFNA5P01569 189 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 HNRNPCP07910 306 aaKnown RBP eCLIP13.75□□□□□ -0.21
CCDC40-213ENST00000574933 EGFEM1PQ0D2K5 195 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 DEFB114Q30KQ6 69 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 KPRPQ5T749 579 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-213ENST00000574933 MLXQ9UH92 298 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 RABAC1Q9UI14 185 aa13.75□□□□□ -0.21
CCDC40-213ENST00000574933 A0A1W2PS18 150 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 G3V4G9 280 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 TAAR5O14804 337 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 BMI1P35226 326 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 EIF2B2P49770 351 aaKnown RBP13.74□□□□□ -0.21
CCDC40-213ENST00000574933 AP2S1P53680 142 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-213ENST00000574933 LYZP61626 148 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 ZNF266Q14584 549 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 KCNRGQ8N5I3 272 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 STPG3Q8N7X2 389 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 RHPN1-AS1Q9BWJ2 59 aa13.74□□□□□ -0.21
CCDC40-213ENST00000574933 A0A0D9SG52 128 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 APOHP02749 345 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-213ENST00000574933 CD300CQ08708 224 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 MIC13Q5XKP0 118 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 DYNLRB2Q8TF09 96 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 ST8SIA2Q92186 375 aa13.73□□□□□ -0.21
CCDC40-213ENST00000574933 HYLS1Q96M11 299 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms