RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TXN2Q99757 166 aa7.03□□□□□ -1.28
VPS39-207ENST00000563692 IGLV11-55A0A075B6I3 123 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 MDFIC2A0A1B0GVS7 189 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 A6NDX4 124 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 C9JQL5 133 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 HOXA3O43365 443 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 HYPMO75409 117 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 IGHV3-48P01763 117 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 OR5G3P0C626 314 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 C8orf88P0DMB2 117 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 EGR2P11161 476 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 GATA2P23769 480 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 MEF2BQ02080 365 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 ZNF90Q03938 601 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 FBLN7Q53RD9 439 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 ASPHD1Q5U4P2 390 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 SHISA2Q6UWI4 295 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 Q6YL49 198 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 PQLC2Q6ZP29 291 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 TMEM86BQ8N661 226 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 STXBP6Q8NFX7 210 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 FAM110DQ8TAY7 271 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 NKX6-2Q9C056 277 aaPredicted RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 TMPRSS5Q9H3S3 457 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 SEPSECSQ9HD40 501 aaKnown RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 TMEM167BQ9NRX6 74 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 ZNF355PQ9NSJ1 428 aa7.02□□□□□ -1.29
VPS39-207ENST00000563692 GAR1Q9NY12 217 aaKnown RBP7.02□□□□□ -1.29
VPS39-207ENST00000563692 IGKV1D-37A0A075B6S9 117 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 IGHV3-21A0A0B4J1V1 117 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 A0A1B0GUS0 222 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 K7EIM0 57 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 PDE6DO43924 150 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 GNG7O60262 68 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 RD3LP0DJH9 198 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 ARL14EPLP0DKL9 152 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 ADCYAP1P18509 176 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 ORM2P19652 201 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 S100A7P31151 101 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 CEBPGP53567 150 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 LY6EQ16553 131 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 FAM74A3Q4VXF1 159 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 C9orf152Q5JTZ5 239 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 C19orf35Q6ZS72 473 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 MIR17HGQ75NE6 70 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 TMEM219Q86XT9 240 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 OR4F5Q8NH21 305 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 OR5R1Q8NH85 324 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 VN1R17PQ8TDU5 208 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 Q8WTZ3 238 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 FANCD2OSQ96PS1 177 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 HSPB9Q9BQS6 159 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 ZNF747Q9BV97 191 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 C21orf62Q9NYP8 219 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 MRPL36Q9P0J6 103 aaKnown RBP7.01□□□□□ -1.29
VPS39-207ENST00000563692 FBXL7Q9UJT9 491 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 DMRT1Q9Y5R6 373 aa7.01□□□□□ -1.29
VPS39-207ENST00000563692 SOX21Q9Y651 276 aaPredicted RBP7.01□□□□□ -1.29
VPS39-207ENST00000563692 TRAV41A0A0B4J266 112 aa7□□□□□ -1.29
VPS39-207ENST00000563692 C11orf94C9JXX5 98 aa7□□□□□ -1.29
VPS39-207ENST00000563692 F6UZH7 168 aa7□□□□□ -1.29
VPS39-207ENST00000563692 TMEM250H0YL14 139 aa7□□□□□ -1.29
VPS39-207ENST00000563692 ATP6V0E1O15342 81 aa7□□□□□ -1.29
VPS39-207ENST00000563692 PAGE4O60829 102 aa7□□□□□ -1.29
VPS39-207ENST00000563692 EIF3GO75821 320 aaKnown RBP eCLIP7□□□□□ -1.29
VPS39-207ENST00000563692 IGLC1P0CG04 106 aa7□□□□□ -1.29
VPS39-207ENST00000563692 GCHFRP30047 84 aa7□□□□□ -1.29
VPS39-207ENST00000563692 PLP1P60201 277 aa7□□□□□ -1.29
VPS39-207ENST00000563692 YPEL3P61236 119 aaPredicted RBP7□□□□□ -1.29
VPS39-207ENST00000563692 RPL15P61313 204 aaKnown RBP7□□□□□ -1.29
VPS39-207ENST00000563692 NDPQ00604 133 aa7□□□□□ -1.29
VPS39-207ENST00000563692 GUCA2BQ16661 112 aa7□□□□□ -1.29
VPS39-207ENST00000563692 ECSCRQ19T08 205 aa7□□□□□ -1.29
VPS39-207ENST00000563692 KLK9Q2XQG4 91 aa7□□□□□ -1.29
VPS39-207ENST00000563692 Q56UQ5 140 aa7□□□□□ -1.29
VPS39-207ENST00000563692 CST9LP1Q5W188 147 aa7□□□□□ -1.29
VPS39-207ENST00000563692 NECAP1Q8NC96 275 aa7□□□□□ -1.29
VPS39-207ENST00000563692 CLRN3Q8NCR9 226 aa7□□□□□ -1.29
VPS39-207ENST00000563692 OR51G1Q8NGK1 321 aa7□□□□□ -1.29
VPS39-207ENST00000563692 OR1B1Q8NGR6 318 aa7□□□□□ -1.29
VPS39-207ENST00000563692 TMEM37Q8WXS4 190 aa7□□□□□ -1.29
VPS39-207ENST00000563692 UHRF2Q96PU4 802 aa7□□□□□ -1.29
VPS39-207ENST00000563692 OR4F4Q96R69 305 aa7□□□□□ -1.29
VPS39-207ENST00000563692 NIPSNAP3BQ9BS92 247 aa7□□□□□ -1.29
VPS39-207ENST00000563692 PRDM13Q9H4Q3 707 aa7□□□□□ -1.29
VPS39-207ENST00000563692 KLK9Q9UKQ9 250 aa7□□□□□ -1.29
VPS39-207ENST00000563692 RNF24Q9Y225 148 aa7□□□□□ -1.29
VPS39-207ENST00000563692 ARL2-SNX15V9GYD0 113 aa7□□□□□ -1.29
VPS39-207ENST00000563692 FAM181BA6NEQ2 426 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 M0R036 132 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 OR7C2O60412 319 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 OR2J3O76001 311 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 NDUFB8O95169 186 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 TOMM40O96008 361 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 IGF1P05019 195 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 PSG1P11464 419 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 FCGR2BP31994 310 aaPredicted RBP6.99□□□□□ -1.29
VPS39-207ENST00000563692 IER3P46695 156 aa6.99□□□□□ -1.29
VPS39-207ENST00000563692 CRIP2P52943 208 aaPredicted RBP6.99□□□□□ -1.29
VPS39-207ENST00000563692 BTN1A1Q13410 526 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms