RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 AGPAT2O15120 278 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 APOHP02749 345 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-227ENST00000557269 FOLR2P14207 255 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 CBLN1P23435 193 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 AP2S1P53680 142 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-227ENST00000557269 USF2Q15853 346 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-227ENST00000557269 TEPPQ6URK8 271 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 BTNL8Q6UX41 500 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 CYP2G1PQ6ZSU1 146 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 OR51G1Q8NGK1 321 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 ATP5SQ99766 215 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 NEURL2Q9BR09 285 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 FBXL17Q9UF56 701 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 SLC45A2Q9UMX9 530 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 UFC1Q9Y3C8 167 aa9.73□□□□□ -0.85
SHMT2-227ENST00000557269 IGHV3OR16-13A0A075B7E8 117 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 IGHV3-74A0A0B4J1X5 117 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 G3V4G9 280 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 K7EMT4 169 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 SAP30O75446 220 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 SCGB2A1O75556 95 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 IL4P05112 153 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 C8orf88P0DMB2 117 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 FGF7P21781 194 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 INO80EQ8NBZ0 244 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-227ENST00000557269 DAZ1Q9NQZ3 744 aaKnown RBP9.72□□□□□ -0.85
SHMT2-227ENST00000557269 PEMTQ9UBM1 199 aa9.72□□□□□ -0.85
SHMT2-227ENST00000557269 IGHV3-66A0A0C4DH42 116 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 LINC00869P0C866 280 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 CXCL2P19875 107 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 NUP62P37198 522 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-227ENST00000557269 ELLP55199 621 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-227ENST00000557269 STPG3Q8N7X2 389 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 BPIFCQ8NFQ6 507 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 RNF125Q96EQ8 232 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 ELOVL1Q9BW60 279 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 GGTLC1Q9BX51 225 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 WDR61Q9GZS3 305 aaKnown RBP9.71□□□□□ -0.86
SHMT2-227ENST00000557269 MFFQ9GZY8 342 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 MLXQ9UH92 298 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 RFNGQ9Y644 331 aa9.71□□□□□ -0.86
SHMT2-227ENST00000557269 IGHV7-4-1A0A0J9YVY3 117 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 HMSDA8MTL9 139 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 FABP1P07148 127 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 CAMLGP49069 296 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 LYZP61626 148 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 OPCMLQ14982 345 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 C9orf66Q5T8R8 295 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 SAMD5Q5TGI4 173 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 MIC13Q5XKP0 118 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 MCRIP2Q9BUT9 160 aaKnown RBP9.7□□□□□ -0.86
SHMT2-227ENST00000557269 PBDC1Q9BVG4 233 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 NPCDR1Q9BY65 106 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 SIGLEC8Q9NYZ4 499 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 DOK5Q9P104 306 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 SMPXQ9UHP9 88 aa9.7□□□□□ -0.86
SHMT2-227ENST00000557269 CHEK1O14757 476 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 DFFBO76075 338 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 C1QBP02746 253 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 ORM2P19652 201 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 NPPCP23582 126 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 CRYBB3P26998 211 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 EIF2B2P49770 351 aaKnown RBP9.69□□□□□ -0.86
SHMT2-227ENST00000557269 PRR20EP86478 221 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 PRR20CP86479 221 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 PRR20DP86480 221 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 PRR20BP86481 221 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 PRR20AP86496 221 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 DEFB114Q30KQ6 69 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 ST8SIA2Q92186 375 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 RSG1Q9BU20 258 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 CYTL1Q9NRR1 136 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 MRPL27Q9P0M9 148 aaKnown RBP9.69□□□□□ -0.86
SHMT2-227ENST00000557269 U3KQE9 123 aa9.69□□□□□ -0.86
SHMT2-227ENST00000557269 IZUMO1RA6ND01 250 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 WIPF1O43516 503 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 IGLV1-51P01701 117 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 RPL29P47914 159 aaKnown RBP9.68□□□□□ -0.86
SHMT2-227ENST00000557269 KRTAP10-11P60412 298 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 SELENOTP62341 195 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 RAB31Q13636 194 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 LGALSLQ3ZCW2 172 aaPredicted RBP9.68□□□□□ -0.86
SHMT2-227ENST00000557269 CD300EQ496F6 205 aaPredicted RBP9.68□□□□□ -0.86
SHMT2-227ENST00000557269 RPL7L1Q6DKI1 246 aaKnown RBP9.68□□□□□ -0.86
SHMT2-227ENST00000557269 PATE2Q6UY27 113 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 KCNRGQ8N5I3 272 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 OR1B1Q8NGR6 318 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 MARC2Q969Z3 335 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 METTL26Q96S19 204 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 GINS3Q9BRX5 216 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 RHPN1-AS1Q9BWJ2 59 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 VSIRQ9H7M9 311 aa9.68□□□□□ -0.86
SHMT2-227ENST00000557269 MPDU1O75352 247 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 IFNA5P01569 189 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 HNRNPCP07910 306 aaKnown RBP eCLIP9.67□□□□□ -0.86
SHMT2-227ENST00000557269 PLP1P60201 277 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 ZNF345Q14585 488 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 GCSAMLQ5JQS6 135 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 SCGB1C1Q8TD33 95 aa9.67□□□□□ -0.86
SHMT2-227ENST00000557269 DYNLRB2Q8TF09 96 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms