RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 HOXA1P49639 335 aaPredicted RBP9.31□□□□□ -0.92
PTCH1-218ENST00000548945 EIF2B2P49770 351 aaKnown RBP9.31□□□□□ -0.92
PTCH1-218ENST00000548945 PIGPP57054 158 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 LINC00336Q6ZUF6 198 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 TMEM230Q96A57 120 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 RNF126Q9BV68 326 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 ENY2Q9NPA8 101 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 U3KQE9 123 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 X6R8D5 127 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 DNAH17Q9UFH2 4485 aa9.31□□□□□ -0.92
PTCH1-218ENST00000548945 IGHV4-4A0A075B6R2 117 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 RPS10-NUDT3A0A1W2PQS6 291 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 HELTA6NFD8 242 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 OR4E1P0C645 316 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 ZNF688P0C7X2 276 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 C4BPBP20851 252 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 AP2S1P53680 142 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-218ENST00000548945 AARDQ4LEZ3 155 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 C4orf46Q504U0 113 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 Q6ZTC4 211 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 FAM219AQ8IW50 185 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 CSNK1G2-AS1Q8NCQ2 148 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 CHAC2Q8WUX2 184 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 RRNAD1Q96FB5 475 aaKnown RBP9.3□□□□□ -0.92
PTCH1-218ENST00000548945 SEPSECSQ9HD40 501 aaKnown RBP9.3□□□□□ -0.92
PTCH1-218ENST00000548945 MRPL36Q9P0J6 103 aaKnown RBP9.3□□□□□ -0.92
PTCH1-218ENST00000548945 MUC4Q99102 2169 aa9.3□□□□□ -0.92
PTCH1-218ENST00000548945 FAT2Q9NYQ8 4349 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 RYR1P21817 5038 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 ELOA3CA0A087WX78 387 aaPredicted RBP9.29□□□□□ -0.92
PTCH1-218ENST00000548945 KNCNA6PVL3 124 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 PFDN1O60925 122 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 PI3P19957 117 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 UCP1P25874 307 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 HTR2BP41595 481 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 SPCS3P61009 180 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 TMEM128Q5BJH2 165 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 ACTL10Q5JWF8 245 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 CCDC71LQ8N9Z2 235 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 OR52E5Q8NH55 327 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 SEC22CQ9BRL7 303 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 RTBDNQ9BSG5 229 aaPredicted RBP9.29□□□□□ -0.92
PTCH1-218ENST00000548945 C1QTNF4Q9BXJ3 329 aa9.29□□□□□ -0.92
PTCH1-218ENST00000548945 SSNA1O43805 119 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 AMBPP02760 352 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 SLC25A4P12235 298 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 AKR1C4P17516 323 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 YPEL3P61236 119 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-218ENST00000548945 NUTF2P61970 127 aaKnown RBP9.28□□□□□ -0.92
PTCH1-218ENST00000548945 RRAS2P62070 204 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-218ENST00000548945 DHODHQ02127 395 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 DHRS2Q13268 280 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 MLANAQ16655 118 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 TIGITQ495A1 244 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 OR1S2Q8NGQ3 325 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 RNASEH2CQ8TDP1 164 aaKnown RBP9.28□□□□□ -0.92
PTCH1-218ENST00000548945 ZNF431Q8TF32 576 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-218ENST00000548945 RAB40CQ96S21 281 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 MED28Q9H204 178 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 DNAH2Q9P225 4427 aa9.28□□□□□ -0.92
PTCH1-218ENST00000548945 C9orf170A2RU37 121 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 HNRNPCP07910 306 aaKnown RBP eCLIP9.27□□□□□ -0.93
PTCH1-218ENST00000548945 IGLC1P0CG04 106 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 VAMP1P23763 118 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 SNRPD3P62318 126 aaKnown RBP9.27□□□□□ -0.93
PTCH1-218ENST00000548945 PPP1R1AQ13522 171 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 C2orf83Q53S99 150 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 C16orf54Q6UWD8 224 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 AKAP14Q86UN6 197 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 RNASE11Q8TAA1 199 aaKnown RBP9.27□□□□□ -0.93
PTCH1-218ENST00000548945 Q8WTZ3 238 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 GLMPQ8WWB7 406 aa9.27□□□□□ -0.93
PTCH1-218ENST00000548945 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-218ENST00000548945 DEFB131BA0A096LNP1 70 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 A0A0G2JRQ6 117 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 TEX13DA0A0J9YY54 714 aaPredicted RBP9.26□□□□□ -0.93
PTCH1-218ENST00000548945 CRYM-AS1A6NIL9 109 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 SFT2D2O95562 160 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 CDS2O95674 445 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 P0DMU3 169 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 FAM231AP0DMU4 169 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 FAM231CP0DMU5 169 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 ANXA3P12429 323 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 OR10J1P30954 320 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 C12orf74Q32Q52 190 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 SP6Q3SY56 376 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 PSMG4Q5JS54 123 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 ETFRF1Q6IPR1 90 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 PRSS54Q6PEW0 395 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 Q6ZRM9 215 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 C12orf45Q8N5I9 185 aaPredicted RBP9.26□□□□□ -0.93
PTCH1-218ENST00000548945 TMEM222Q9H0R3 208 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 NAA60Q9H7X0 242 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 NRN1Q9NPD7 142 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 CLEC5AQ9NY25 188 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 CACFD1Q9UGQ2 172 aa9.26□□□□□ -0.93
PTCH1-218ENST00000548945 A0A0B4J2A0 478 aa9.25□□□□□ -0.93
PTCH1-218ENST00000548945 A0A1B0GVY2 172 aa9.25□□□□□ -0.93
PTCH1-218ENST00000548945 FAM90A26D6RGX4 464 aa9.25□□□□□ -0.93
PTCH1-218ENST00000548945 NPY1RP25929 384 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms