RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PITX3O75364 302 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 IFNA10P01566 189 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 SLC25A6P12236 298 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 OR10J1P30954 320 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 S100A5P33763 92 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 EIF2B2P49770 351 aaKnown RBP7.67□□□□□ -1.18
CPSF1-203ENST00000527916 DEFB131AP59861 70 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 PYDC2Q56P42 97 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 TMEM41BQ5BJD5 291 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 C16orf54Q6UWD8 224 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 CCDC190Q86UF4 302 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 CENPSQ8N2Z9 138 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 OR11H2Q8NH07 326 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 DTD1Q8TEA8 209 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 DCANP1Q8TF63 244 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 NPIPB3Q92617 1050 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 SEPSECSQ9HD40 501 aaKnown RBP7.67□□□□□ -1.18
CPSF1-203ENST00000527916 V9GYH0 126 aa7.67□□□□□ -1.18
CPSF1-203ENST00000527916 HSPG2P98160 4391 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 AGRNO00468 2067 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 HELTA6NFD8 242 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 NXPH3O95157 252 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 TOMM40O96008 361 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 HNRNPCP07910 306 aaKnown RBP eCLIP7.66□□□□□ -1.18
CPSF1-203ENST00000527916 RD3LP0DJH9 198 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 GPX4P36969 197 aaPredicted RBP7.66□□□□□ -1.18
CPSF1-203ENST00000527916 ZNF79Q15937 498 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 GLMPQ8WWB7 406 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 RBM38Q9H0Z9 239 aaKnown RBP7.66□□□□□ -1.18
CPSF1-203ENST00000527916 RBKSQ9H477 322 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 PRR13Q9NZ81 148 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 RABAC1Q9UI14 185 aa7.66□□□□□ -1.18
CPSF1-203ENST00000527916 CCDC160A6NGH7 325 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 FAM90A26D6RGX4 464 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 RTL8CO15255 209 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 BUB3O43684 328 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 LEMD1Q68G75 181 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 TMED4Q7Z7H5 227 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 STHQ8IWL8 128 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 FAM24BQ8N5W8 94 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 STXBP6Q8NFX7 210 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 OR1S1Q8NH92 325 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 HRH4Q9H3N8 390 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 PFDN2Q9UHV9 154 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 TMED3Q9Y3Q3 217 aa7.65□□□□□ -1.18
CPSF1-203ENST00000527916 HERC1Q15751 4861 aa7.65□□□□□ -1.19
CPSF1-203ENST00000527916 MED6O75586 246 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 SFT2D2O95562 160 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 CA1P00915 261 aaPredicted RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 IL4P05112 153 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 SPP1P10451 314 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 PSG1P11464 419 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 NUP62P37198 522 aaPredicted RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 UBE2MP61081 183 aaKnown RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 GAMTQ14353 236 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 USF2Q15853 346 aaPredicted RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 MORN3Q6PF18 240 aaPredicted RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 TRPT1Q86TN4 253 aaKnown RBP7.64□□□□□ -1.19
CPSF1-203ENST00000527916 OR51G1Q8NGK1 321 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 ACY3Q96HD9 319 aa7.64□□□□□ -1.19
CPSF1-203ENST00000527916 IGHV4-4A0A075B6R2 117 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 DEFB4AO15263 64 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 FABP1P07148 127 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 GIG44P09565 113 aaPredicted RBP7.63□□□□□ -1.19
CPSF1-203ENST00000527916 P0DMU3 169 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 FAM231AP0DMU4 169 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 FAM231CP0DMU5 169 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 VAMP1P23763 118 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 RAB11AP62491 216 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 RPP30P78346 268 aaKnown RBP7.63□□□□□ -1.19
CPSF1-203ENST00000527916 DHRS2Q13268 280 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 SOHLH1Q5JUK2 328 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 SPANXN2Q5MJ10 180 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 OR8G2PQ6IF36 304 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 POM121L12Q8N7R1 296 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 CIB3Q96Q77 187 aaPredicted RBP7.63□□□□□ -1.19
CPSF1-203ENST00000527916 SRRQ9GZT4 340 aa7.63□□□□□ -1.19
CPSF1-203ENST00000527916 IGKV1D-37A0A075B6S9 117 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 TRAV10A0A0B4J240 114 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 NAP1L6A6NFF2 107 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 ZFP92A6NM28 416 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 SNRPGP15A8MWD9 76 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 M0R2N4 97 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 ZNF688P0C7X2 276 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 SNRPD3P62318 126 aaKnown RBP7.62□□□□□ -1.19
CPSF1-203ENST00000527916 PPP1R1AQ13522 171 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 C1orf194Q5T5A4 169 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 SIGLEC15Q6ZMC9 328 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 ZNF575Q86XF7 245 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 RNF125Q96EQ8 232 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 SLC35E1Q96K37 410 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 RAB40CQ96S21 281 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 RNF126Q9BV68 326 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 NRN1Q9NPD7 142 aa7.62□□□□□ -1.19
CPSF1-203ENST00000527916 SYNGR2O43760 224 aa7.61□□□□□ -1.19
CPSF1-203ENST00000527916 CFDP00746 253 aaPredicted RBP7.61□□□□□ -1.19
CPSF1-203ENST00000527916 HLA-DMBP28068 263 aa7.61□□□□□ -1.19
CPSF1-203ENST00000527916 LGALS9BQ3B8N2 356 aa7.61□□□□□ -1.19
CPSF1-203ENST00000527916 MAPKAPK5-AS1Q8N8E1 139 aa7.61□□□□□ -1.19
CPSF1-203ENST00000527916 TRGV9Q99603 122 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms