RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GLRXP35754 106 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 C20orf204Q6ZNR8 217 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 RNASE6Q93091 150 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 ZNF625Q96I27 306 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 WNK2Q9Y3S1 2297 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 CNOT1A5YKK6 2376 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 ANKRD36A6QL64 1941 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 SOCS3O14543 225 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 REG1AP05451 166 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 BMPERQ8N8U9 685 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 WNT2P09544 360 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 PTGDSP41222 190 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 RAX2Q96IS3 184 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 BTCP35070 178 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 RNF126Q9BV68 326 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 TET1Q8NFU7 2136 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 IGHV3-35A0A0C4DH35 117 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 A0A1B0GTI1 187 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 C9JCJ5 164 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 ZNF146Q15072 292 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A2PQ658T7 463 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 DMRTC2Q8IXT2 367 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 C15orf53Q8NAA6 179 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 OR9G1Q8NH87 305 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 TSKUQ8WUA8 353 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 PLEKHB2Q96CS7 222 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 UBL5Q9BZL1 73 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 PLA2G5P39877 138 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 ZC2HC1BQ5TFG8 222 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 NABP1Q96AH0 204 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 TIMP3P35625 211 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 ASPHD2Q6ICH7 369 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 RPRMLQ8N4K4 120 aa7.31□□□□□ -1.24
LIMCH1-218ENST00000513024 A0A1B0GW64 132 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 TCTEX1D4Q5JR98 221 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 ZNF525Q8N782 197 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 LSM4Q9Y4Z0 139 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 A0A0U1RRA0 63 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 CCL1P22362 96 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 PRDM14Q9GZV8 571 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 MYOFQ9NZM1 2061 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 A0A1W2PPM0 123 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 EPOPA6NHQ4 379 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 PEAR1Q5VY43 1037 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 BRK1Q8WUW1 75 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 RTBDNQ9BSG5 229 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 SCRT1Q9BWW7 348 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 CALYQ9NYX4 217 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 MKI67P46013 3256 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 KNCNA6PVL3 124 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 CTSBP07858 339 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 EGR4Q05215 589 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 TFF3Q07654 80 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM57AQ8TBR7 257 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 ITLN1Q8WWA0 313 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 OR5P3Q8WZ94 311 aa7.3□□□□□ -1.24
LIMCH1-218ENST00000513024 SPTAN1Q13813 2472 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 NPIPB13A6NJU9 1138 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 NPIPB5A8MRT5 1133 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 CASP8AP2Q9UKL3 1982 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 NLRC5Q86WI3 1866 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 PROB1E7EW31 1015 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 C1orf162Q8NEQ5 155 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 JPT2Q9H910 190 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 IGKV3D-20A0A0C4DH25 116 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 LY6G6FQ5SQ64 297 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 CLEC7AQ9BXN2 247 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 DOCK6Q96HP0 2047 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 CHD5Q8TDI0 1954 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 E9PLN8 166 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 E9PQ18 207 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 H0YIZ8 118 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM106AQ4KMX7 169 aa7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 RNASE8Q8TDE3 154 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-218ENST00000513024 APOBEC3AP31941 199 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 MRPL23Q16540 153 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 PCSK4Q6UW60 755 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 AMN1Q8IY45 258 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 GCSAMQ8N6F7 178 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 STPG4Q8N801 248 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 ZNF501Q96CX3 271 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 IGHV3OR16-13A0A075B7E8 117 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 IGHV3-74A0A0B4J1X5 117 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 FABP5P3A8MUU1 101 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 DUTP33316 252 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 TEX45Q8NA69 505 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM166AQ6J272 317 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 VGLL1Q99990 258 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 PATJQ8NI35 1801 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 SLC25A48Q6ZT89 311 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 CTHRC1Q96CG8 243 aa7.28□□□□□ -1.24
LIMCH1-218ENST00000513024 FNDC10F2Z333 226 aa7.27□□□□□ -1.24
LIMCH1-218ENST00000513024 MMP23AO75900 390 aa7.27□□□□□ -1.24
LIMCH1-218ENST00000513024 MALP21145 153 aa7.27□□□□□ -1.24
LIMCH1-218ENST00000513024 MIR17HGQ75NE6 70 aa7.27□□□□□ -1.24
LIMCH1-218ENST00000513024 TMEM243Q9BU79 118 aa7.27□□□□□ -1.24
LIMCH1-218ENST00000513024 A0A087WV48 116 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 LINC00158P58513 81 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 NPC2P61916 151 aa7.27□□□□□ -1.25
LIMCH1-218ENST00000513024 LAGE3Q14657 143 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms