RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ZNF705DP0CH99 300 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF705BP0CI00 300 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-207ENST00000507401 CD24P25063 80 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 PTTG1IPP53801 180 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 YPEL3P61236 119 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-207ENST00000507401 EBI3Q14213 229 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 C21orf62-AS1Q17RA5 79 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM30BQ3MIR4 351 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 SLC22A6Q4U2R8 563 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 UTF1Q5T230 341 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 SLC25A24Q6NUK1 477 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 TRAT1Q6PIZ9 186 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF497Q6ZNH5 498 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 TCTEX1D1Q8N7M0 179 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 OR5C1Q8NGR4 320 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 RFESDQ8TAC1 157 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 CMTM2Q8TAZ6 248 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 TOMM40LQ969M1 308 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 CITED2Q99967 270 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-207ENST00000507401 ST6GALNAC5Q9BVH7 336 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 DNAJC4Q9NNZ3 241 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 SLC2A9Q9NRM0 540 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF586Q9NXT0 402 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 BET1LQ9NYM9 111 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 GNG13Q9P2W3 67 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 FUT9Q9Y231 359 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 PLXNB1O43157 2135 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 TRAV30A0A087WSZ9 112 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 A0A1W2PP11 408 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 A0A1W2PPI3 338 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A26D6RGX4 464 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 YPEL1O60688 119 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 DIRAS3O95661 229 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 KRASP01116 189 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 SSTR5P35346 364 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 LOXL3P58215 753 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 CCL20P78556 96 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 Q0VG73 95 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF816Q0VGE8 651 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-207ENST00000507401 PMCHL1Q16048 86 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 DRAM1Q8N682 238 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 OR10X1Q8NGY0 326 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 CIB3Q96Q77 187 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-207ENST00000507401 YPEL2Q96QA6 119 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 FAAP24Q9BTP7 215 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 PARP12Q9H0J9 701 aaKnown RBP6.35□□□□□ -1.39
SCN1A-207ENST00000507401 RIMS4Q9H426 269 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-207ENST00000507401 SEPSECSQ9HD40 501 aaKnown RBP6.35□□□□□ -1.39
SCN1A-207ENST00000507401 SLC35D1Q9NTN3 355 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 PLEKHJ1Q9NW61 149 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF581Q9P0T4 197 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 MOB4Q9Y3A3 225 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 PXMP4Q9Y6I8 212 aa6.35□□□□□ -1.39
SCN1A-207ENST00000507401 SAA2-SAA4A0A096LPE2 208 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 C3orf85A0A1B0GTC6 90 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 SDCBPO00560 298 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-207ENST00000507401 MPPED1O15442 326 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 SPINT2O43291 252 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 PI3P19957 117 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 AADACP22760 399 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 IL3RAP26951 378 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 THBS3P49746 956 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 SUMO1P63165 101 aaKnown RBP6.34□□□□□ -1.39
SCN1A-207ENST00000507401 ADIRFQ15847 76 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 PRSS8Q16651 343 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 LTC4SQ16873 150 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 BEAN1Q3B7T3 259 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 NSUN5P1Q3KNT7 163 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 FAM162BQ5T6X4 162 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 WDR73Q6P4I2 378 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 C19orf35Q6ZS72 473 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 LYZL2Q7Z4W2 148 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM144Q7Z5S9 345 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF695Q8IW36 515 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 OR4X2Q8NGF9 303 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 LEAP2Q969E1 77 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 ST6GALNAC6Q969X2 333 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 TRAPPC2LQ9UL33 140 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 TSSC4Q9Y5U2 329 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-207ENST00000507401 LY96Q9Y6Y9 160 aa6.34□□□□□ -1.39
SCN1A-207ENST00000507401 IGHV1-3A0A0C4DH29 117 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 CTXND1A0A1B0GTU2 59 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 TCRBV4S1A1TA0A5B7 111 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 IGSF23A1L1A6 192 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 CEBPZOSA8MTT3 80 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 C12orf77C9JDV5 145 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 G3V4G9 280 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 H0Y980 276 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 IGHV3-7P01780 117 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 IGHG2P01859 326 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 TMEM11P17152 192 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 CD1BP29016 333 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF137PP52743 207 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 ELLP55199 621 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 RPL23P62829 140 aaKnown RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 RPP30P78346 268 aaKnown RBP6.33□□□□□ -1.4
SCN1A-207ENST00000507401 HTD2P86397 168 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 DIAPH2-AS1Q14236 149 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 HES1Q14469 280 aa6.33□□□□□ -1.4
SCN1A-207ENST00000507401 TMEM95Q3KNT9 176 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms