RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SGPP2Q8IWX5 399 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 NECAP1Q8NC96 275 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 OR11H1Q8NG94 326 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 OR1L6Q8NGR2 347 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 OR4A16Q8NH70 328 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 GLYATL2Q8WU03 294 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 S100ZQ8WXG8 99 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 IL22RA2Q969J5 263 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 MRGPRFQ96AM1 343 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 GALNT14Q96FL9 552 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM56Q96MV1 263 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TP53RKQ96S44 253 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 C7orf50Q9BRJ6 194 aaKnown RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 NAA60Q9H7X0 242 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 GNB4Q9HAV0 340 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 NDUFA4L2Q9NRX3 87 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 MCUBQ9NWR8 336 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 COA4Q9NYJ1 87 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 CACFD1Q9UGQ2 172 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 NSG2Q9Y328 171 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 SELENOKQ9Y6D0 94 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TET2Q6N021 2002 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 A0A1B0GW64 132 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 IGLC7A0M8Q6 106 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 C15orf61A6NNL5 157 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 E7EUB6 86 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 CLN5O75503 358 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 IGHV3-11P01762 117 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 P0C879 139 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 ANXA3P12429 323 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 AREGP15514 252 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 CTRB1P17538 263 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 ZP3P21754 424 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 INSL3P51460 131 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 SRPXP78539 464 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 RHOGP84095 191 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TATDN3Q17R31 274 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TRIM16LQ309B1 348 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 SP6Q3SY56 376 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM128Q5BJH2 165 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 KPRPQ5T749 579 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 CTRB2Q6GPI1 263 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF429Q86V71 674 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 SELENOHQ8IZQ5 122 aaKnown RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 RBPMSQ93062 196 aaKnown RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 LSM10Q969L4 123 aaKnown RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 OR5B12Q96R08 314 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 SDHCQ99643 169 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM14BQ9NUH8 114 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 THYN1Q9P016 225 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 PEF1Q9UBV8 284 aaKnown RBP1.88□□□□□ -2.11
VPS13A-208ENST00000423463 OR51B2Q9Y5P1 312 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM56-RWDD3S4R434 201 aa1.88□□□□□ -2.11
VPS13A-208ENST00000423463 IGLV11-55A0A075B6I3 123 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 A0A087WZ39 114 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 A0A0B4J2A0 478 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 IGKV3D-20A0A0C4DH25 116 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 A0A0J9YWU9 116 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 DUXBA0A1W2PPF3 345 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 INS-IGF2F8WCM5 200 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 OVOL1O14753 267 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 OR2J3O76001 311 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 NDUFB6O95139 128 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 IGKV1-5P01602 117 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 OR5AC1P0C628 307 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 APELAP0DMC3 54 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 OR13C7P0DN81 318 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 DEFA4P12838 97 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 IL7P13232 177 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 IGLL1P15814 213 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 AKR1C4P17516 323 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 AKR1C2P52895 323 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 PAX9P55771 341 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 KRTAP10-5P60370 271 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 SPCS3P61009 180 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 UBE2MP61081 183 aaKnown RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 ERHP84090 104 aaKnown RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 KLF5Q13887 457 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 DEFB136Q30KP8 78 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 C9orf66Q5T8R8 295 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 SLC25A24Q6NUK1 477 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 SIGLEC15Q6ZMC9 328 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 LGI3Q8N145 548 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 OR52E5Q8NH55 327 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 RNASE11Q8TAA1 199 aaKnown RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 VN1R17PQ8TDU5 208 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 CASTOR1Q8WTX7 329 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 DCUN1D4Q92564 292 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 DLX4Q92988 240 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM230Q96A57 120 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 GPR146Q96CH1 333 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 CXorf58Q96LI9 332 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 PDCD10Q9BUL8 212 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 CCDC32Q9BV29 185 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 HINT2Q9BX68 163 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 ALX4Q9H161 411 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-208ENST00000423463 SHPKQ9UHJ6 478 aa1.87□□□□□ -2.11
VPS13A-208ENST00000423463 FAT3Q8TDW7 4589 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms