RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DEFB131BA0A096LNP1 70 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 ANKRD20A5PA0PJZ0 165 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 EMP1P54849 157 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 SUPT4H1P63272 117 aaKnown RBP8.32□□□□□ -1.08
USP4-204ENST00000416417 MRPS10P82664 201 aaKnown RBP8.32□□□□□ -1.08
USP4-204ENST00000416417 SSBP1Q04837 148 aaKnown RBP8.32□□□□□ -1.08
USP4-204ENST00000416417 SURF2Q15527 256 aaPredicted RBP8.32□□□□□ -1.08
USP4-204ENST00000416417 TMEM41BQ5BJD5 291 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 DTD1Q8TEA8 209 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 LINC00052Q96N35 136 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 WDR12Q9GZL7 423 aaKnown RBP8.32□□□□□ -1.08
USP4-204ENST00000416417 MCUBQ9NWR8 336 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 PLA2G2EQ9NZK7 142 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 IGKV1D-37A0A075B6S9 117 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 AP2S1P53680 142 aaPredicted RBP8.31□□□□□ -1.08
USP4-204ENST00000416417 TCTAP57738 103 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 SNRPD3P62318 126 aaKnown RBP8.31□□□□□ -1.08
USP4-204ENST00000416417 OR2F1Q13607 317 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 SMCO1Q147U7 214 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 ETFRF1Q6IPR1 90 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 LGI3Q8N145 548 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 DYNC2LI1Q8TCX1 351 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 RNF125Q96EQ8 232 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 PRRT1Q99946 306 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 MRPS26Q9BYN8 205 aaKnown RBP8.31□□□□□ -1.08
USP4-204ENST00000416417 KIAA1109Q2LD37 5005 aa8.31□□□□□ -1.08
USP4-204ENST00000416417 ZFP92A6NM28 416 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 F6UB75 175 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 M0R2N4 97 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 CTDSPLO15194 276 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 IAPPP10997 89 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 LYZP61626 148 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 KLF9Q13886 244 aaPredicted RBP8.3□□□□□ -1.08
USP4-204ENST00000416417 GAMTQ14353 236 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 CENPSQ8N2Z9 138 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 HSPB7Q9UBY9 170 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 PAIP2BQ9ULR5 123 aaKnown RBP8.3□□□□□ -1.08
USP4-204ENST00000416417 KCNIP3Q9Y2W7 256 aa8.3□□□□□ -1.08
USP4-204ENST00000416417 HLA-DRB4P13762 266 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 CCR6P51684 374 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 OR1S1Q8NH92 325 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 IL22RA2Q969J5 263 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 RNF126Q9BV68 326 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 HLA-DRB4X5D2U9 266 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 A0A0B4J2A0 478 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 GSTZ1O43708 216 aaPredicted RBP8.29□□□□□ -1.08
USP4-204ENST00000416417 NUTF2P61970 127 aaKnown RBP8.29□□□□□ -1.08
USP4-204ENST00000416417 TMED4Q7Z7H5 227 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 NOXA1Q86UR1 476 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 OR4B1Q8NGF8 309 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 SLC35B3Q9H1N7 401 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 CCDC59Q9P031 241 aaKnown RBP8.29□□□□□ -1.08
USP4-204ENST00000416417 SHPKQ9UHJ6 478 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 SCP2D1Q9UJQ7 156 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 U3KQ87 197 aa8.29□□□□□ -1.08
USP4-204ENST00000416417 TNFSF8P32971 234 aa8.28□□□□□ -1.08
USP4-204ENST00000416417 NKX2-1P43699 371 aaPredicted RBP8.28□□□□□ -1.08
USP4-204ENST00000416417 PPP1R14BQ96C90 147 aa8.28□□□□□ -1.08
USP4-204ENST00000416417 SLC35E1Q96K37 410 aa8.28□□□□□ -1.08
USP4-204ENST00000416417 C20orf173Q96LM9 149 aa8.28□□□□□ -1.08
USP4-204ENST00000416417 C1QTNF4Q9BXJ3 329 aa8.28□□□□□ -1.08
USP4-204ENST00000416417 DNAH2Q9P225 4427 aa8.27□□□□□ -1.08
USP4-204ENST00000416417 PCLOQ9Y6V0 5065 aa8.27□□□□□ -1.08
USP4-204ENST00000416417 IGKV1OR2-108A0A075B7D4 117 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 FABP12A6NFH5 140 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 SOCS3O14543 225 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 AMBPP02760 352 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 HTN3P15516 51 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 ZNF705AQ6ZN79 300 aaPredicted RBP8.27□□□□□ -1.09
USP4-204ENST00000416417 ZNF709Q8N972 641 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 COQ8AQ8NI60 647 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 SOSTQ9BQB4 213 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 SLIRPQ9GZT3 109 aaKnown RBP8.27□□□□□ -1.09
USP4-204ENST00000416417 MAGT1Q9H0U3 335 aa8.27□□□□□ -1.09
USP4-204ENST00000416417 SAV1Q9H4B6 383 aaPredicted RBP8.27□□□□□ -1.09
USP4-204ENST00000416417 FAT2Q9NYQ8 4349 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 IGLV2-18A0A075B6J9 118 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 ZNF705FA8MVS1 300 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 PRM2P04554 102 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 ZNF705DP0CH99 300 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 ZNF705BP0CI00 300 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 PRB4P10163 310 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 GATA2P23769 480 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 GPX4P36969 197 aaPredicted RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 FAM222AQ5U5X8 452 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 FAM78BQ5VT40 261 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 IGFL4Q6B9Z1 124 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 OR8G2PQ6IF36 304 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 POM121L12Q8N7R1 296 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 RAB2BQ8WUD1 216 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 NDUFAF3Q9BU61 184 aa8.26□□□□□ -1.09
USP4-204ENST00000416417 SEPSECSQ9HD40 501 aaKnown RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 RSL24D1Q9UHA3 163 aaKnown RBP8.26□□□□□ -1.09
USP4-204ENST00000416417 H3BMQ9 156 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 RTL8CO15255 209 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 PITX3O75364 302 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 SPART-AS1P0CW21 52 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 ANXA3P12429 323 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 VAMP1P23763 118 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 ID1P41134 155 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms