RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 IL4P05112 153 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 C8orf88P0DMB2 117 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 CLINT1Q14677 625 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 OR51G1Q8NGK1 321 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 TMEM147Q9BVK8 224 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 MRPL27Q9P0M9 148 aaKnown RBP16.78■□□□□ 0.28
SHMT1-203ENST00000354098 FXYD6-FXYD2A0A087WZ82 144 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 UBE2L5PA0A1B0GUS4 154 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 IGLV1-51P01701 117 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 APOHP02749 345 aaPredicted RBP16.78■□□□□ 0.28
SHMT1-203ENST00000354098 USF2Q15853 346 aaPredicted RBP16.78■□□□□ 0.28
SHMT1-203ENST00000354098 ATP6V1FQ16864 119 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 GPR61Q9BZJ8 451 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 MLXQ9UH92 298 aa16.78■□□□□ 0.28
SHMT1-203ENST00000354098 IGHV3OR16-13A0A075B7E8 117 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 IGHV3-74A0A0B4J1X5 117 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 WI2-2373I1.2A0A1W2PRP0 233 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 CYP2G1PQ6ZSU1 146 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 MGST2Q99735 147 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 GINS3Q9BRX5 216 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 SMIM3Q9BZL3 60 aa16.77■□□□□ 0.28
SHMT1-203ENST00000354098 IGHV7-4-1A0A0J9YVY3 117 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 FABP1P07148 127 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 KRTAP10-11P60412 298 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 BEAN1Q3B7T3 259 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 BTNL8Q6UX41 500 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 ZNF546Q86UE3 836 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 MARC2Q969Z3 335 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 RNF125Q96EQ8 232 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 ST6GAL2Q96JF0 529 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 SMPXQ9UHP9 88 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 WDR83OSQ9Y284 106 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 NOTCH1P46531 2555 aa16.76■□□□□ 0.27
SHMT1-203ENST00000354098 AGPAT2O15120 278 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 DEFB114Q30KQ6 69 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 DYNLRB2Q8TF09 96 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 AQP10Q96PS8 301 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 PBDC1Q9BVG4 233 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 IGHV3-66A0A0C4DH42 116 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 IZUMO1RA6ND01 250 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 NPPCP23582 126 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 LYZP61626 148 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 CD300EQ496F6 205 aaPredicted RBP16.75■□□□□ 0.27
SHMT1-203ENST00000354098 METTL26Q96S19 204 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 RHPN1-AS1Q9BWJ2 59 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 TNFSF18Q9UNG2 199 aa16.75■□□□□ 0.27
SHMT1-203ENST00000354098 CHEK1O14757 476 aa16.74■□□□□ 0.27
SHMT1-203ENST00000354098 CRYBB3P26998 211 aa16.74■□□□□ 0.27
SHMT1-203ENST00000354098 EGFEM1PQ0D2K5 195 aa16.74■□□□□ 0.27
SHMT1-203ENST00000354098 WFDC1Q9HC57 220 aa16.74■□□□□ 0.27
SHMT1-203ENST00000354098 RNF222A6NCQ9 220 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 KPRPQ5T749 579 aaPredicted RBP16.73■□□□□ 0.27
SHMT1-203ENST00000354098 BPIFCQ8NFQ6 507 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 OR11H4Q8NGC9 324 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 ST8SIA2Q92186 375 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 ATP5SQ99766 215 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 SLC45A2Q9UMX9 530 aa16.73■□□□□ 0.27
SHMT1-203ENST00000354098 FGF7P21781 194 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 NUP62P37198 522 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-203ENST00000354098 CAMLGP49069 296 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 INO80EQ8NBZ0 244 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-203ENST00000354098 RNF2Q99496 336 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 TECRQ9NZ01 308 aaKnown RBP16.72■□□□□ 0.27
SHMT1-203ENST00000354098 AP2S1P53680 142 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-203ENST00000354098 SELENOTP62341 195 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 STPG3Q8N7X2 389 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 GGTLC1Q9BX51 225 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 FBXL17Q9UF56 701 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 RABAC1Q9UI14 185 aa16.72■□□□□ 0.27
SHMT1-203ENST00000354098 ARPC5O15511 151 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 PRB2P02812 416 aaPredicted RBP16.71■□□□□ 0.27
SHMT1-203ENST00000354098 HNRNPCP07910 306 aaKnown RBP eCLIP16.71■□□□□ 0.27
SHMT1-203ENST00000354098 LINC00869P0C866 280 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 ORM2P19652 201 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 VSIRQ9H7M9 311 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 DOK5Q9P104 306 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 U3KQE9 123 aa16.71■□□□□ 0.27
SHMT1-203ENST00000354098 CFDP00746 253 aaPredicted RBP16.7■□□□□ 0.26
SHMT1-203ENST00000354098 RAB31Q13636 194 aa16.7■□□□□ 0.26
SHMT1-203ENST00000354098 TMEM61Q8N0U2 210 aa16.7■□□□□ 0.26
SHMT1-203ENST00000354098 OR1B1Q8NGR6 318 aa16.7■□□□□ 0.26
SHMT1-203ENST00000354098 WDR61Q9GZS3 305 aaKnown RBP16.7■□□□□ 0.26
SHMT1-203ENST00000354098 DFFBO76075 338 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 EIF2B2P49770 351 aaKnown RBP16.69■□□□□ 0.26
SHMT1-203ENST00000354098 MIC13Q5XKP0 118 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 NPCDR1Q9BY65 106 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 CD300CQ08708 224 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 AKAP14Q86UN6 197 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 TCTE3Q8IZS6 198 aa16.69■□□□□ 0.26
SHMT1-203ENST00000354098 ZNF785A8K8V0 405 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 MPDU1O75352 247 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 PRR20EP86478 221 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 PRR20CP86479 221 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 PRR20DP86480 221 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 PRR20BP86481 221 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 PRR20AP86496 221 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 OPCMLQ14982 345 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 OR2K2Q8NGT1 345 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 ARL6Q9H0F7 186 aa16.68■□□□□ 0.26
SHMT1-203ENST00000354098 A0A1W2PS18 150 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms