RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SSX1Q16384 188 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 TIMM50Q3ZCQ8 353 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ZFP69Q49AA0 526 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 SCGB2B2Q4G0G5 96 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 NHLRC3Q5JS37 347 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 CASC10Q5T4H9 136 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ADAMTSL4-AS1Q5T5F5 129 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 PRSS54Q6PEW0 395 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ZNF773Q6PK81 442 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ZCCHC23Q6ZST2 131 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 TMUB2Q71RG4 321 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 LINC00596Q86U02 117 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 NUP35Q8NFH5 326 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 OR13C8Q8NGS7 320 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 OR2T27Q8NH04 317 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 OR52P1PQ8NH57 321 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 SLC7A6Q92536 515 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ARL11Q969Q4 196 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 ADAT3Q96EY9 351 aaPredicted RBP3.35□□□□□ -1.87
CD44-202ENST00000278385 OR5M11Q96RB7 305 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 PDCD10Q9BUL8 212 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 LINC00470Q9BZP3 86 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 DPY30Q9C005 99 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 PARP12Q9H0J9 701 aaKnown RBP3.35□□□□□ -1.87
CD44-202ENST00000278385 IFI27L2Q9H2X8 130 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 Q9H3A6 140 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 TMEM38BQ9NVV0 291 aa3.35□□□□□ -1.87
CD44-202ENST00000278385 CROCCQ5TZA2 2017 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 TRBV19A0A075B6N1 114 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 DUXBA0A1W2PPF3 345 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 KRTAP4-16G5E9R7 235 aaPredicted RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 DNASE2O00115 360 aaPredicted RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 MRASO14807 208 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 GNG7O60262 68 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 TNFSF13O75888 250 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 APOMO95445 188 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 MUC1P15941 1255 aaPredicted RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 PPP1CCP36873 323 aaKnown RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 RPL35P42766 123 aaKnown RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 TAS2R30P59541 319 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 HERVK_113P63121 156 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 HBA1P69905 142 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 MRPS10P82664 201 aaKnown RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 HIST1H1AQ02539 215 aaPredicted RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 OCIAD2Q56VL3 154 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 IL34Q6ZMJ4 242 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 ZNF329Q86UD4 541 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 BAP18Q8IXM2 172 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 ZNF664Q8N3J9 261 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 YIPF7Q8N8F6 280 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 CNEP1R1Q8N9A8 125 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 TMEM229BQ8NBD8 167 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 LINC01560Q8TB33 94 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 ORAOV1Q8WV07 137 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 FAM104AQ969W3 186 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 IGF2BP2-AS1Q96M15 143 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 C18orf15Q96N68 181 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 YPEL4Q96NS1 127 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 NDFIP1Q9BT67 221 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 PAXXQ9BUH6 204 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 ZNF436Q9C0F3 470 aaPredicted RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 OR2H1Q9GZK4 316 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 YIPF3Q9GZM5 350 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 OR2D2Q9H210 308 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 JPT2Q9H910 190 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 RNF122Q9H9V4 155 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 NIT2Q9NQR4 276 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 MCTS1Q9ULC4 181 aaKnown RBP3.34□□□□□ -1.87
CD44-202ENST00000278385 LAMTOR2Q9Y2Q5 125 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 PYGO1Q9Y3Y4 419 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 FLVCR1Q9Y5Y0 555 aa3.34□□□□□ -1.87
CD44-202ENST00000278385 MYO7BQ6PIF6 2116 aa3.34□□□□□ -1.88
CD44-202ENST00000278385 TENM4Q6N022 2769 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 UQCRHLA0A096LP55 91 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 IGHV1-69-2A0A0G2JMI3 117 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 TMEM269A0A1B0GVZ9 245 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 C17orf51A8MQB3 221 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 C9JAW5 83 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 F6UZH7 168 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 LGALS9O00182 355 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 GGCTO75223 188 aaKnown RBP3.33□□□□□ -1.88
CD44-202ENST00000278385 CPSF4O95639 269 aaKnown RBP3.33□□□□□ -1.88
CD44-202ENST00000278385 OR2H2O95918 312 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 CGAP01215 116 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 IFNA7P01567 189 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 SCTP09683 121 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 SCGB1C2P0DMR2 95 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 PPIBP23284 216 aaKnown RBP3.33□□□□□ -1.88
CD44-202ENST00000278385 FKBP2P26885 142 aaKnown RBP3.33□□□□□ -1.88
CD44-202ENST00000278385 S100A3P33764 101 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 INPP1P49441 399 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 AKR1D1P51857 326 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 DEFA3P59666 94 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 NCS1P62166 190 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 MMDQ15546 238 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 OR8G1Q15617 311 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 ZNF141Q15928 474 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 RSPO1Q2MKA7 263 aaPredicted RBP3.33□□□□□ -1.88
CD44-202ENST00000278385 ORMDL2Q53FV1 153 aa3.33□□□□□ -1.88
CD44-202ENST00000278385 C2orf66Q6UXQ4 117 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms