RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PARP12Q9H0J9 701 aaKnown RBP4.17□□□□□ -1.74
SCN1A-218ENST00000640036 COX11Q9Y6N1 276 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 OBSL1O75147 1896 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 COL4A1P02462 1669 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF257Q9Y2Q1 563 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 LY6G6DO95868 133 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 SSTR5P35346 364 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 PRB3Q04118 309 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-218ENST00000640036 TMEM123Q8N131 208 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 FAM24BQ8N5W8 94 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 RCHY1Q96PM5 261 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 C1QTNF5Q9BXJ0 243 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 SDF2L1Q9HCN8 221 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 LHFPL6Q9Y693 200 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 IGHV3-66A0A0C4DH42 116 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 ELANEP08246 267 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 PSG5Q15238 335 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF562Q6V9R5 426 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 LHFPL4Q7Z7J7 247 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 RNF182Q8N6D2 247 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 FAM216AQ8WUB2 273 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 SOSTQ9BQB4 213 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF253O75346 499 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 GCAP28676 217 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 RUSC1-AS1Q66K80 236 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 OR11H1Q8NG94 326 aa4.17□□□□□ -1.74
SCN1A-218ENST00000640036 HMSDA8MTL9 139 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 ADORA2A-AS1P86434 159 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 LOXL1Q08397 574 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SAPCD1Q5SSQ6 148 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 PRNTQ86SH4 94 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 KCNS1Q96KK3 526 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 FAM223BA6NKX1 122 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 NPIPB8E9PQR5 432 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 PIN1P1O15428 100 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CTSDP07339 412 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF250P15622 560 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CFHR2P36980 270 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 INSL3P51460 131 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 MGAT2Q10469 447 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 FAM223AQ8IWN6 122 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 STPG2Q8N412 459 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 C1orf43Q9BWL3 253 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 RNF167Q9H6Y7 350 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 PXMP4Q9Y6I8 212 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 MLNRO43193 412 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CA1P00915 261 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 EVI2AP22794 236 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SYNJ2BPP57105 145 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF146Q15072 292 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 OR8A1Q8NGG7 326 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 OR5A1Q8NGJ0 315 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 OR11H2Q8NH07 326 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 ALX4Q9H161 411 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 V9GYH0 126 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 PCDH15Q96QU1 1955 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 C11orf94C9JXX5 98 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SRSF12Q8WXF0 261 aaKnown RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 AMY1AP04745 511 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 IGHV1-8P0DP01 117 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 PRCDQ00LT1 54 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CGB2Q6NT52 195 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 TMEM37Q8WXS4 190 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 RNF5Q99942 180 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 DUSP21Q9H596 190 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 A0A1B0GTL3 188 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CD3DP04234 171 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 HSPB1P04792 205 aaKnown RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 GP9P14770 177 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SLAQ13239 276 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 WDR82Q6UXN9 313 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 HEPN1Q6WQI6 88 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CBLN2Q8IUK8 224 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 LRRC75AQ8NAA5 344 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 KLF12Q9Y4X4 402 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 DENND4CQ5VZ89 1909 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SOCS1O15524 211 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 INSP01308 110 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 UCP1P25874 307 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 DEFB112Q30KQ8 113 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SLC25A34Q6PIV7 304 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 TEX45Q8NA69 505 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 CHCHD5Q9BSY4 110 aa4.16□□□□□ -1.74
SCN1A-218ENST00000640036 SSBP4Q9BWG4 385 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-218ENST00000640036 TRGV11A0A075B6L2 103 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 C15orf61A6NNL5 157 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 H0YL77 283 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 SFTA3P0C7M3 94 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 DYNLT3P51808 116 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 LINC00303Q3SY05 128 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 HIST2H2BCQ6DN03 193 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 GGNQ86UU5 652 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 CIARTQ8N365 385 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 MBNL3Q9NUK0 354 aaKnown RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 NHP2Q9NX24 153 aaKnown RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 SETD2Q9BYW2 2564 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 LY6G6EA0A0G2JKS1 128 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 K7ERS5 55 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 DEFB130BP0DP73 79 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 DEFB130AP0DP74 79 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms