RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 RPL8P62917 257 aaKnown RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 MMDQ15546 238 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 PRSS8Q16651 343 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 BSXQ3C1V8 233 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 SPANXN5Q5MJ07 72 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 PPP1R27Q86WC6 154 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 TMEM183AQ8IXX5 376 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 ZNF709Q8N972 641 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 ABHD5Q8WTS1 349 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 FRZBQ92765 325 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 SMIM7Q9BQ49 75 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 QTRT1Q9BXR0 403 aaKnown RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 ZNF430Q9H8G1 570 aaPredicted RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 C1RLQ9NZP8 487 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 PHOX2AO14813 284 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 RBMXL2O75526 392 aaKnown RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 RPP30P78346 268 aaKnown RBP11.25□□□□□ -0.61
CLN3-242ENST00000635958 ARL16Q0P5N6 197 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 C5orf64Q2M2E5 130 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 VWC2Q2TAL6 325 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 HAPLN4Q86UW8 402 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 MMD2Q8IY49 270 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 OR10P1Q8NGE3 313 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 OR5B3Q8NH48 314 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 FBXL15Q9H469 300 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 RBKSQ9H477 322 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 TPSG1Q9NRR2 321 aa11.25□□□□□ -0.61
CLN3-242ENST00000635958 PLXNB1O43157 2135 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 TEX50A0A1B0GTY4 177 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 H7BYZ3 331 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 NXPH3O95157 252 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 LY6G6DO95868 133 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 CD99P14209 185 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 ACOT6Q3I5F7 207 aaPredicted RBP11.24□□□□□ -0.61
CLN3-242ENST00000635958 RBM14Q96PK6 669 aaKnown RBP11.24□□□□□ -0.61
CLN3-242ENST00000635958 IMMP2LQ96T52 175 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 TCF19Q9Y242 345 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 OR51B2Q9Y5P1 312 aa11.24□□□□□ -0.61
CLN3-242ENST00000635958 TET2Q6N021 2002 aaPredicted RBP11.24□□□□□ -0.61
CLN3-242ENST00000635958 ANK3Q12955 4377 aaKnown RBP11.23□□□□□ -0.61
CLN3-242ENST00000635958 A6NDX4 124 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 PPP5D1E7EU14 171 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 GCGP01275 180 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 TYMSP04818 313 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 IER3P46695 156 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 KCNIP4Q6PIL6 250 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 Q6YL49 198 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 REC114Q7Z4M0 266 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 Q8N9W7 124 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 C22orf15Q8WYQ4 148 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 ZNF48Q96MX3 618 aaPredicted RBP11.23□□□□□ -0.61
CLN3-242ENST00000635958 SMR3AQ99954 134 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 GPR61Q9BZJ8 451 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 HIVEP2P31629 2446 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 MDFIC2A0A1B0GVS7 189 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 H3BUX3 64 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 FCN1O00602 326 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 MPDU1O75352 247 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 HNF1AP20823 631 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 FGF7P21781 194 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 JOSD1Q15040 202 aaPredicted RBP11.23□□□□□ -0.61
CLN3-242ENST00000635958 OR10G9Q8NGN4 311 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 OR10G7Q8NGN6 311 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 OR1L8Q8NGR8 309 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 PACRGQ96M98 296 aaPredicted RBP11.23□□□□□ -0.61
CLN3-242ENST00000635958 NOL4LQ96MY1 436 aaPredicted RBP11.23□□□□□ -0.61
CLN3-242ENST00000635958 COMMD5Q9GZQ3 224 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 VSIRQ9H7M9 311 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 NDUFA4L2Q9NRX3 87 aa11.23□□□□□ -0.61
CLN3-242ENST00000635958 UBE2L5PA0A1B0GUS4 154 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 NCBP2LA6PVI3 153 aaKnown RBP11.22□□□□□ -0.61
CLN3-242ENST00000635958 INS-IGF2F8WCM5 200 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 PDE6DO43924 150 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 GALR1P47211 349 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 SSBP2P81877 361 aaPredicted RBP11.22□□□□□ -0.61
CLN3-242ENST00000635958 PRCDQ00LT1 54 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 ADIRFQ15847 76 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 C16orf82Q7Z2V1 217 aa11.22□□□□□ -0.61
CLN3-242ENST00000635958 RPP25LQ8N5L8 163 aaKnown RBP11.22□□□□□ -0.61
CLN3-242ENST00000635958 F6UZH7 168 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 GGCTO75223 188 aaKnown RBP11.21□□□□□ -0.61
CLN3-242ENST00000635958 MYOD1P15172 320 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 VDAC2P45880 294 aaPredicted RBP11.21□□□□□ -0.61
CLN3-242ENST00000635958 COMPP49747 757 aaPredicted RBP11.21□□□□□ -0.61
CLN3-242ENST00000635958 FGF8P55075 233 aaPredicted RBP11.21□□□□□ -0.61
CLN3-242ENST00000635958 RPL23P62829 140 aaKnown RBP11.21□□□□□ -0.61
CLN3-242ENST00000635958 PLGLAQ15195 96 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 ZNF562Q6V9R5 426 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 IL17RELQ6ZVW7 336 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 OR51G1Q8NGK1 321 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 OR1P1Q8NH06 330 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 OR4X1Q8NH49 305 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 DTD1Q8TEA8 209 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 TMEM170AQ8WVE7 144 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 SLC25A33Q9BSK2 321 aa11.21□□□□□ -0.61
CLN3-242ENST00000635958 CGB1A6NKQ9 187 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 E7EUB6 86 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 ACTL6BO94805 426 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 IGHV4-59P01825 116 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 HLA-DRB1P01911 266 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms